EnhancerDB
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  3. vista3340[chr1:153510895-153511054]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3340[chr1:153510895-153511054]
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Tissue distribution of vista3340
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Transcription factor that possibly regulate vista3340[chr1:153510895-153511054]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 153510767 153511063 USF2 UCSC Txn Factor no Conserved 107831253
chr1 153510782 153511057 USF1 UCSC Txn Factor no Conserved 107831261
chr1 153510895 153510901 ETS1 JASPAR yes 118371079
chr1 153510905 153510918 SMAD2 JASPAR yes 118371080
chr1 153510909 153510913 NFE TRANSFAC yes 118371081
chr1 153510909 153510923 CREB3 JASPAR yes 118371082
chr1 153510910 153510920 MAX JASPAR yes 118371083
chr1 153510910 153510921 USF1 JASPAR yes 118371084
chr1 153510910 153510921 USF2 JASPAR yes 118371085
chr1 153510911 153510921 BHLHE40 JASPAR yes 118371086
chr1 153510911 153510921 BHLHE41 JASPAR yes 118371087
chr1 153510911 153510921 MLXIPL JASPAR yes 118371088
chr1 153510911 153510921 MLX JASPAR yes 118371089
chr1 153510911 153510921 SREBF1 JASPAR yes 118371090
chr1 153510911 153510921 SREBF2 JASPAR yes 118371091
chr1 153510911 153510921 TFE3 JASPAR yes 118371092
chr1 153510911 153510921 TFEB JASPAR yes 118371093
chr1 153510911 153510921 TFEC JASPAR yes 118371094
chr1 153510911 153510922 USF1 JASPAR yes 118371095
chr1 153510911 153510922 USF2 JASPAR yes 118371096
chr1 153510912 153510922 MAX JASPAR yes 118371097
chr1 153510913 153510918 MYC TRANSFAC yes 118371098
chr1 153510913 153510918 USF1 TRANSFAC yes 118371099
chr1 153510913 153510918 USF2 TRANSFAC yes 118371100
chr1 153510926 153510932 MZF1 JASPAR yes 118371101
chr1 153510959 153510980 ZNF263 JASPAR yes 118371102
chr1 153510980 153510990 EMX1 JASPAR yes 118371103
chr1 153510980 153510990 GSX2 JASPAR yes 118371104
chr1 153510980 153510990 HOXB2 JASPAR yes 118371105
chr1 153510980 153510990 MEOX2 JASPAR yes 118371106
chr1 153510980 153510990 MNX1 JASPAR yes 118371107
chr1 153510981 153510989 LMX1A JASPAR yes 118371108
chr1 153510981 153510989 LMX1B JASPAR yes 118371109
chr1 153510981 153510989 NKX6-1 JASPAR yes 118371110
chr1 153510981 153510989 NKX6-2 JASPAR yes 118371111
chr1 153510981 153510989 PDX1 JASPAR yes 118371112
chr1 153510981 153510989 VAX1 JASPAR yes 118371113
chr1 153510981 153510989 VAX2 JASPAR yes 118371114
chr1 153510981 153510989 VSX1 JASPAR yes 118371115
chr1 153510984 153510993 PITX3 JASPAR yes 118371116
chr1 153510984 153510994 GSC2 JASPAR yes 118371117
chr1 153510984 153510994 GSC JASPAR yes 118371118
chr1 153510985 153510993 OTX1 JASPAR yes 118371119
chr1 153510985 153510993 OTX2 JASPAR yes 118371120
chr1 153510985 153510993 RHOXF1 JASPAR yes 118371121
chr1 153510997 153511010 SCRT2 JASPAR yes 118371122
chr1 153511007 153511013 SP1 TRANSFAC yes 118371123
chr1 153511007 153511017 SP1 JASPAR yes 118371124
chr1 153511007 153511028 ZNF263 JASPAR yes 118371125
chr1 153511010 153511025 NR2C2 JASPAR yes 118371126
chr1 153511016 153511025 THAP1 JASPAR yes 118371127
chr1 153511019 153511029 POU6F2 JASPAR yes 118371128
chr1 153511020 153511030 GSX1 JASPAR yes 118371129
chr1 153511020 153511030 GSX2 JASPAR yes 118371130
chr1 153511020 153511030 HOXA2 JASPAR yes 118371131
chr1 153511020 153511030 MEOX1 JASPAR yes 118371132
chr1 153511020 153511030 NOTO JASPAR yes 118371133
chr1 153511021 153511029 NKX6-1 JASPAR yes 118371134
chr1 153511021 153511029 NKX6-2 JASPAR yes 118371135
chr1 153511023 153511027 YY1 TRANSFAC yes 118371136
chr1 153511026 153511029 MYB TRANSFAC yes 118371137
chr1 153511031 153511042 SPDEF JASPAR yes 118371138
SNP sites on vista3340[chr1:153510895-153511054]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 153510908 rs188645969 G C
SMAD2 USF1 USF2
634816
chr1 153510969 rs150541313 C A,T
USF1 USF2 ZNF263
634817
chr1 153511025 rs559860483 A G
GSX1 GSX2 HOXA2 MEOX1 NKX6-1 NKX6-2 NOTO NR2C2 POU6F2 THAP1 USF1 USF2 YY1 ZNF263
634818
chr1 153511029 rs144613719 AC A
GSX1 GSX2 HOXA2 MEOX1 MYB NKX6-1 NKX6-2 NOTO POU6F2 USF1 USF2
634819
Genes possibly regulated by vista3340[chr1:153510895-153511054]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 153409534 153412425 - S100A7L2 ENSG00000197364.6 153412425 0.0 0.0 1267 1530
chr1 153430220 153433177 - S100A7 ENSG00000143556.4 153433177 0.94 0.97 1268 22282
chr1 153507075 153508720 - S100A6 ENSG00000197956.5 153508720 0.76 1.0 1269 97825
chr1 153509623 153514241 - S100A5 ENSG00000196420.3 153514241 0.94 1.0 1270 96813
chr1 153516089 153522612 - S100A4 ENSG00000196154.7 153522612 0.83 0.99 1271 88442
chr1 153519805 153521848 - S100A3 ENSG00000188015.5 153521848 0.9 0.99 1272 89206
chr1 153533584 153540366 - S100A2 ENSG00000196754.6 153540366 1.0 1.0 1273 70688
chr1 153579362 153585621 - S100A16 ENSG00000188643.6 153585621 0.95 1.0 1274 25433
chr1 153586731 153589462 - S100A14 ENSG00000189334.4 153589462 0.95 1.0 1275 21592
chr1 153591263 153606568 - S100A13 ENSG00000189171.9 153606568 0.77 0.98 1276 4486
chr1 153600402 153604513 + S100A1 ENSG00000160678.7 153600402 0.88 0.93 1277 10652
chr1 153606525 153618782 + CHTOP ENSG00000160679.8 153606525 0.73 1.0 1278 4529
Expression level of Genes
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miRNAs possibly regulated by vista3340[chr1:153510895-153511054]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results