EnhancerDB
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  3. vista35404[chr2:238382776-238383011]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35404[chr2:238382776-238383011]
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Tissue distribution of vista35404
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Transcription factor that possibly regulate vista35404[chr2:238382776-238383011]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 238382808 238382813 GATA2 JASPAR yes 22241337
chr2 238382808 238382813 GATA2 JASPAR yes 82114094
chr2 238382816 238382835 RFX2 JASPAR yes 22241338
chr2 238382816 238382835 RFX2 JASPAR yes 82114095
chr2 238382818 238382833 RFX5 JASPAR yes 22241339
chr2 238382818 238382833 RFX5 JASPAR yes 82114096
chr2 238382844 238382848 ESR1 TRANSFAC yes 22241340
chr2 238382844 238382848 ESR1 TRANSFAC yes 82114097
chr2 238382851 238382855 NFE TRANSFAC yes 22241341
chr2 238382851 238382855 NFE TRANSFAC yes 82114098
chr2 238382856 238382861 SP1 TRANSFAC yes 22241342
chr2 238382856 238382861 SP1 TRANSFAC yes 82114099
chr2 238382864 238382884 RREB1 JASPAR yes 22241343
chr2 238382864 238382884 RREB1 JASPAR yes 82114100
chr2 238382867 238382882 RUNX2 JASPAR yes 22241344
chr2 238382867 238382882 RUNX2 JASPAR yes 82114101
chr2 238382868 238382877 RUNX2 JASPAR yes 22241345
chr2 238382868 238382877 RUNX2 JASPAR yes 82114102
chr2 238382868 238382878 RUNX3 JASPAR yes 22241346
chr2 238382868 238382878 RUNX3 JASPAR yes 82114103
chr2 238382868 238382888 RREB1 JASPAR yes 22241347
chr2 238382868 238382888 RREB1 JASPAR yes 82114104
chr2 238382884 238382898 SPIC JASPAR yes 22241348
chr2 238382884 238382898 SPIC JASPAR yes 82114105
chr2 238382892 238382907 RUNX2 JASPAR yes 22241349
chr2 238382892 238382907 RUNX2 JASPAR yes 82114106
chr2 238382920 238382939 RFX2 JASPAR yes 22241350
chr2 238382920 238382939 RFX2 JASPAR yes 82114107
chr2 238382924 238382940 RFX2 JASPAR yes 22241351
chr2 238382924 238382940 RFX3 JASPAR yes 22241352
chr2 238382924 238382940 RFX4 JASPAR yes 22241353
chr2 238382924 238382940 RFX5 JASPAR yes 22241354
chr2 238382924 238382940 RFX2 JASPAR yes 82114108
chr2 238382924 238382940 RFX3 JASPAR yes 82114109
chr2 238382924 238382940 RFX4 JASPAR yes 82114110
chr2 238382924 238382940 RFX5 JASPAR yes 82114111
chr2 238382925 238382944 RFX2 JASPAR yes 22241355
chr2 238382925 238382944 RFX2 JASPAR yes 82114112
chr2 238382927 238382932 ETS2 TRANSFAC yes 22241356
chr2 238382927 238382932 ETS2 TRANSFAC yes 82114113
chr2 238382959 238382965 ZNF354C JASPAR yes 22241357
chr2 238382959 238382965 ZNF354C JASPAR yes 82114114
chr2 238382963 238382973 ZNF740 JASPAR yes 22241358
chr2 238382963 238382973 ZNF740 JASPAR yes 82114115
chr2 238382985 238382991 SOX10 JASPAR yes 22241359
chr2 238382985 238382991 SOX10 JASPAR yes 82114116
chr2 238382988 238383001 SMAD2 JASPAR yes 22241360
chr2 238382988 238383001 SMAD2 JASPAR yes 82114117
SNP sites on vista35404[chr2:238382776-238383011]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 238382838 rs548497838 C A no 6479977
chr2 238382839 rs568622648 C T no 6479978
chr2 238382899 rs13408361 A G
RUNX2
6479979
chr2 238382908 rs112814371 G C no 6479980
chr2 238382911 rs111280571 A C no 6479981
chr2 238382913 rs113930442 C A no 6479982
chr2 238382938 rs7569079 A G
RFX2 RFX3 RFX4 RFX5
6479983
chr2 238382965 rs140377625 C A
ZNF354C ZNF740
6479984
Genes possibly regulated by vista35404[chr2:238382776-238383011]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 238232646 238323018 - COL6A3 ENSG00000163359.11 238323018 0.8 0.98 3286 40242
chr2 238330063 238333919 - AC112721.1 ENSG00000222022.1 238333919 0.99 0.96 3287 51143
chr2 238394071 238463961 + MLPH ENSG00000115648.9 238394071 0.87 1.0 3288 88940
chr2 238475217 238475818 + PRLH ENSG00000071677.1 238475217 0.99 0.95 3289 7794
Expression level of Genes
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miRNAs possibly regulated by vista35404[chr2:238382776-238383011]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr2 238419611 238419631 + hsa-miR-6811-3p MIMAT0027523 238395893 0.0006157635467980296 0.890444 0.0 1023
Expression level of miRNAs
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