EnhancerDB
  1. Home
  2. Enhancers
  3. vista35407[chr2:238391204-238391436]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35407[chr2:238391204-238391436]
Back to top
Tissue distribution of vista35407
Back to top
Transcription factor that possibly regulate vista35407[chr2:238391204-238391436]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 238391030 238391554 POLR2A UCSC Txn Factor no Conserved 108435914
chr2 238391235 238391486 USF1 UCSC Txn Factor no Conserved 108435915
chr2 238391224 238391235 NFE2L2 JASPAR yes 22241468
chr2 238391229 238391233 ESR1 TRANSFAC yes 22241469
chr2 238391278 238391283 SP1 TRANSFAC yes 22241470
chr2 238391298 238391302 H1TF2 TRANSFAC yes 22241471
chr2 238391298 238391302 NFE TRANSFAC yes 22241472
chr2 238391298 238391302 SRF TRANSFAC yes 22241473
chr2 238391329 238391348 REST JASPAR yes 22241474
chr2 238391342 238391346 LFA1 TRANSFAC yes 22241475
chr2 238391346 238391357 USF1 JASPAR yes 22241476
chr2 238391346 238391357 USF2 JASPAR yes 22241477
chr2 238391347 238391357 TFEB JASPAR yes 22241478
chr2 238391347 238391357 TFEC JASPAR yes 22241479
chr2 238391359 238391370 NRL JASPAR yes 22241480
chr2 238391386 238391397 USF1 JASPAR yes 22241481
chr2 238391386 238391398 PKNOX2 JASPAR yes 22241482
chr2 238391387 238391397 SREBF1 JASPAR yes 22241483
chr2 238391387 238391397 SREBF2 JASPAR yes 22241484
chr2 238391387 238391397 TFEC JASPAR yes 22241485
chr2 238391387 238391398 USF1 JASPAR yes 22241486
chr2 238391387 238391398 USF2 JASPAR yes 22241487
chr2 238391392 238391400 MEIS2 JASPAR yes 22241488
chr2 238391392 238391400 MEIS3 JASPAR yes 22241489
chr2 238391394 238391404 MSC JASPAR yes 22241490
chr2 238391407 238391419 TFAP2A JASPAR yes 22241491
chr2 238391407 238391419 TFAP2B JASPAR yes 22241492
chr2 238391407 238391419 TFAP2C JASPAR yes 22241493
chr2 238391407 238391422 TFAP2A JASPAR yes 22241494
chr2 238391409 238391418 TFAP2A JASPAR yes 22241495
chr2 238391414 238391418 LFA1 TRANSFAC yes 22241496
chr2 238391415 238391432 PAX1 JASPAR yes 22241497
chr2 238391415 238391432 PAX9 JASPAR yes 22241498
chr2 238391420 238391431 CEBPB JASPAR yes 22241499
chr2 238391420 238391432 DBP JASPAR yes 22241500
chr2 238391420 238391432 HLF JASPAR yes 22241501
chr2 238391420 238391432 TEF JASPAR yes 22241502
chr2 238391421 238391432 CEBPA JASPAR yes 22241503
chr2 238391427 238391430 MYB TRANSFAC yes 22241504
SNP sites on vista35407[chr2:238391204-238391436]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 238391258 rs10198279 A G
POLR2A USF1
6480045
chr2 238391324 rs73098852 G T
POLR2A USF1
6480046
Genes possibly regulated by vista35407[chr2:238391204-238391436]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 238232646 238323018 - COL6A3 ENSG00000163359.11 238323018 0.8 0.98 3286 31814
chr2 238330063 238333919 - AC112721.1 ENSG00000222022.1 238333919 0.99 0.96 3287 42715
chr2 238394071 238463961 + MLPH ENSG00000115648.9 238394071 0.87 1.0 3288 97365
chr2 238475217 238475818 + PRLH ENSG00000071677.1 238475217 0.99 0.95 3289 16219
Expression level of Genes
Back to top
miRNAs possibly regulated by vista35407[chr2:238391204-238391436]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr2 238419611 238419631 + hsa-miR-6811-3p MIMAT0027523 238395893 0.0017524644030668128 0.890444 0.0 1023
Expression level of miRNAs
Back to top