EnhancerDB
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  3. vista35409[chr2:238396973-238397455]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35409[chr2:238396973-238397455]
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Tissue distribution of vista35409
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Transcription factor that possibly regulate vista35409[chr2:238396973-238397455]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 238396971 238396982 ESRRA JASPAR yes 22241557
chr2 238396971 238396982 ESRRA JASPAR yes 82115354
chr2 238396977 238396988 TBX2 JASPAR yes 22241558
chr2 238396977 238396988 TBX2 JASPAR yes 82115355
chr2 238396991 238397001 TFAP4 JASPAR yes 22241559
chr2 238396991 238397001 TFAP4 JASPAR yes 82115356
chr2 238396996 238397000 NFE TRANSFAC yes 22241560
chr2 238396996 238397000 NFE TRANSFAC yes 82115357
chr2 238397007 238397011 NFE TRANSFAC yes 22241561
chr2 238397007 238397011 NFE TRANSFAC yes 82115358
chr2 238397044 238397048 NFE TRANSFAC yes 22241562
chr2 238397044 238397048 NFE TRANSFAC yes 82115359
chr2 238397081 238397085 NFE TRANSFAC yes 22241563
chr2 238397081 238397085 NFE TRANSFAC yes 82115360
chr2 238397091 238397097 HiNF-A TRANSFAC yes 22241564
chr2 238397091 238397097 HiNF-A TRANSFAC yes 82115361
chr2 238397102 238397112 FIGLA JASPAR yes 22241565
chr2 238397102 238397112 TCF3 JASPAR yes 22241566
chr2 238397102 238397112 FIGLA JASPAR yes 82115362
chr2 238397102 238397112 TCF3 JASPAR yes 82115363
chr2 238397103 238397112 SNAI2 JASPAR yes 22241567
chr2 238397103 238397112 SNAI2 JASPAR yes 82115364
chr2 238397104 238397109 USF2 TRANSFAC yes 22241568
chr2 238397104 238397109 USF2 TRANSFAC yes 82115365
chr2 238397104 238397122 NFYA JASPAR yes 22241569
chr2 238397104 238397122 NFYA JASPAR yes 82115366
chr2 238397107 238397123 NFYA JASPAR yes 22241570
chr2 238397107 238397123 NFYA JASPAR yes 82115367
chr2 238397110 238397125 NFYB JASPAR yes 22241571
chr2 238397110 238397125 NFYB JASPAR yes 82115368
chr2 238397116 238397121 SP1 TRANSFAC yes 22241572
chr2 238397116 238397121 SP1 TRANSFAC yes 82115369
chr2 238397120 238397135 ESR2 JASPAR yes 22241573
chr2 238397120 238397135 ESR2 JASPAR yes 82115370
chr2 238397123 238397133 TFAP4 JASPAR yes 22241574
chr2 238397123 238397133 TFAP4 JASPAR yes 82115371
chr2 238397125 238397138 NR2F1 JASPAR yes 22241575
chr2 238397125 238397138 NR2F1 JASPAR yes 82115372
chr2 238397129 238397137 CREB1 JASPAR yes 22241576
chr2 238397129 238397137 CREB1 JASPAR yes 82115373
chr2 238397129 238397146 RARA JASPAR yes 22241577
chr2 238397129 238397146 RARA JASPAR yes 82115374
chr2 238397149 238397157 EHF JASPAR yes 22241578
chr2 238397149 238397157 EHF JASPAR yes 82115375
chr2 238397159 238397167 SP1 TRANSFAC yes 22241579
chr2 238397159 238397167 SP1 TRANSFAC yes 82115376
chr2 238397159 238397169 SP1 JASPAR yes 22241580
chr2 238397159 238397169 SP1 JASPAR yes 82115377
chr2 238397165 238397171 SP1 TRANSFAC yes 22241581
chr2 238397165 238397171 SP1 TRANSFAC yes 82115378
chr2 238397194 238397199 GATA1 TRANSFAC yes 22241582
chr2 238397194 238397199 GATA1 TRANSFAC yes 82115379
chr2 238397199 238397206 NKX3-1 JASPAR yes 22241583
chr2 238397199 238397206 NKX3-1 JASPAR yes 82115380
chr2 238397208 238397228 ESR1 JASPAR yes 22241584
chr2 238397208 238397228 ESR1 JASPAR yes 82115381
chr2 238397210 238397230 PPARG JASPAR yes 22241585
chr2 238397210 238397230 PPARG JASPAR yes 82115382
chr2 238397211 238397229 ESR1 JASPAR yes 22241586
chr2 238397211 238397229 ESR2 JASPAR yes 22241587
chr2 238397211 238397229 ESR1 JASPAR yes 82115383
chr2 238397211 238397229 ESR2 JASPAR yes 82115384
chr2 238397212 238397218 ESR1 TRANSFAC yes 22241588
chr2 238397212 238397218 ESR1 TRANSFAC yes 82115385
chr2 238397212 238397229 ESR1 JASPAR yes 22241589
chr2 238397212 238397229 ESR1 JASPAR yes 82115386
chr2 238397212 238397230 ESR2 JASPAR yes 22241590
chr2 238397212 238397230 ESR2 JASPAR yes 82115387
chr2 238397213 238397228 ESR2 JASPAR yes 22241591
chr2 238397213 238397228 ESR2 JASPAR yes 82115388
chr2 238397213 238397233 ESR1 JASPAR yes 22241592
chr2 238397213 238397233 ESR1 JASPAR yes 82115389
chr2 238397214 238397218 ESR1 TRANSFAC yes 22241593
chr2 238397214 238397218 ESR1 TRANSFAC yes 82115390
chr2 238397256 238397265 SNAI2 JASPAR yes 22241594
chr2 238397256 238397265 SNAI2 JASPAR yes 82115391
chr2 238397256 238397266 ID4 JASPAR yes 22241595
chr2 238397256 238397266 TCF3 JASPAR yes 22241596
chr2 238397256 238397266 TCF4 JASPAR yes 22241597
chr2 238397256 238397266 ID4 JASPAR yes 82115392
chr2 238397256 238397266 TCF3 JASPAR yes 82115393
chr2 238397256 238397266 TCF4 JASPAR yes 82115394
chr2 238397287 238397291 YY1 TRANSFAC yes 22241598
chr2 238397287 238397291 YY1 TRANSFAC yes 82115395
chr2 238397316 238397326 MAX JASPAR yes 22241599
chr2 238397316 238397326 MAX JASPAR yes 82115396
chr2 238397323 238397328 TFAP2A TRANSFAC yes 22241600
chr2 238397323 238397328 TFAP2A TRANSFAC yes 82115397
chr2 238397323 238397329 MZF1 JASPAR yes 22241601
chr2 238397323 238397329 MZF1 JASPAR yes 82115398
chr2 238397353 238397367 JUN JASPAR yes 22241602
chr2 238397353 238397367 JUN JASPAR yes 82115399
chr2 238397356 238397367 FOSL2 JASPAR yes 22241603
chr2 238397356 238397367 JUNB JASPAR yes 22241604
chr2 238397356 238397367 FOSL2 JASPAR yes 82115400
chr2 238397356 238397367 JUNB JASPAR yes 82115401
chr2 238397357 238397368 FOS JASPAR yes 22241605
chr2 238397357 238397368 FOSL1 JASPAR yes 22241606
chr2 238397357 238397368 JUND JASPAR yes 22241607
chr2 238397357 238397368 FOS JASPAR yes 82115402
chr2 238397357 238397368 FOSL1 JASPAR yes 82115403
chr2 238397357 238397368 JUND JASPAR yes 82115404
chr2 238397358 238397365 JUN TRANSFAC yes 22241608
chr2 238397358 238397365 JUN TRANSFAC yes 82115405
chr2 238397359 238397370 BATF JASPAR yes 22241609
chr2 238397359 238397370 BATF JASPAR yes 82115406
chr2 238397365 238397386 IRF1 JASPAR yes 22241610
chr2 238397365 238397386 IRF1 JASPAR yes 82115407
chr2 238397369 238397384 STAT2 JASPAR yes 22241611
chr2 238397369 238397384 STAT2 JASPAR yes 82115408
chr2 238397383 238397393 TFAP4 JASPAR yes 22241612
chr2 238397383 238397393 TFAP4 JASPAR yes 82115409
chr2 238397396 238397405 HIC2 JASPAR yes 22241613
chr2 238397396 238397405 HIC2 JASPAR yes 82115410
chr2 238397407 238397428 ZNF263 JASPAR yes 22241614
chr2 238397407 238397428 ZNF263 JASPAR yes 82115411
chr2 238397435 238397448 TFAP2A JASPAR yes 22241615
chr2 238397435 238397448 TFAP2B JASPAR yes 22241616
chr2 238397435 238397448 TFAP2C JASPAR yes 22241617
chr2 238397435 238397448 TFAP2A JASPAR yes 82115412
chr2 238397435 238397448 TFAP2B JASPAR yes 82115413
chr2 238397435 238397448 TFAP2C JASPAR yes 82115414
chr2 238397441 238397455 PLAG1 JASPAR yes 22241618
chr2 238397441 238397455 PLAG1 JASPAR yes 82115415
chr2 238397449 238397470 IRF1 JASPAR yes 22241619
chr2 238397449 238397470 IRF1 JASPAR yes 82115416
chr2 238397452 238397466 IRF7 JASPAR yes 22241620
chr2 238397452 238397466 IRF7 JASPAR yes 82115417
chr2 238397453 238397467 STAT1 JASPAR yes 22241621
chr2 238397453 238397467 STAT1 JASPAR yes 82115418
chr2 238397453 238397468 PRDM1 JASPAR yes 22241622
chr2 238397453 238397468 STAT2 JASPAR yes 22241623
chr2 238397453 238397468 PRDM1 JASPAR yes 82115419
chr2 238397453 238397468 STAT2 JASPAR yes 82115420
chr2 238397453 238397471 IRF2 JASPAR yes 22241624
chr2 238397453 238397471 IRF2 JASPAR yes 82115421
SNP sites on vista35409[chr2:238396973-238397455]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 238396985 rs72620830 C T
TBX2
6480132
chr2 238396986 rs116186581 C T
TBX2
6480133
chr2 238397059 rs7588180 C A,T no 6480134
chr2 238397080 rs533466194 A G no 6480135
chr2 238397187 rs73098861 G A no 6480136
chr2 238397215 rs74440269 G A
ESR1 ESR2 PPARG
6480137
chr2 238397314 rs116681488 G A no 6480138
chr2 238397318 rs574090219 C A
MAX
6480139
chr2 238397372 rs6754003 A G
IRF1 STAT2
6480140
Genes possibly regulated by vista35409[chr2:238396973-238397455]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 238232646 238323018 - COL6A3 ENSG00000163359.11 238323018 0.8 0.98 3286 26045
chr2 238330063 238333919 - AC112721.1 ENSG00000222022.1 238333919 0.99 0.96 3287 36946
chr2 238394071 238463961 + MLPH ENSG00000115648.9 238394071 0.87 1.0 3288 97098
chr2 238475217 238475818 + PRLH ENSG00000071677.1 238475217 0.99 0.95 3289 22238
Expression level of Genes
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miRNAs possibly regulated by vista35409[chr2:238396973-238397455]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr2 238419611 238419631 + hsa-miR-6811-3p MIMAT0027523 238395893 0.006019563581640331 0.890444 0.0 1023
Expression level of miRNAs
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