EnhancerDB
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  3. vista35546[chr2:241309624-241309945]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35546[chr2:241309624-241309945]
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Tissue distribution of vista35546
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Transcription factor that possibly regulate vista35546[chr2:241309624-241309945]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 241309646 241309661 MEF2C JASPAR yes 22247823
chr2 241309646 241309661 MEF2C JASPAR yes 82279501
chr2 241309647 241309662 MEF2A JASPAR yes 22247824
chr2 241309647 241309662 MEF2A JASPAR yes 82279502
chr2 241309648 241309660 MEF2A JASPAR yes 22247825
chr2 241309648 241309660 MEF2B JASPAR yes 22247826
chr2 241309648 241309660 MEF2D JASPAR yes 22247827
chr2 241309648 241309660 MEF2A JASPAR yes 82279503
chr2 241309648 241309660 MEF2B JASPAR yes 82279504
chr2 241309648 241309660 MEF2D JASPAR yes 82279505
chr2 241309649 241309659 MEF2A JASPAR yes 22247828
chr2 241309649 241309659 MEF2A JASPAR yes 82279506
chr2 241309671 241309686 RFX5 JASPAR yes 22247829
chr2 241309671 241309686 RFX5 JASPAR yes 82279507
chr2 241309686 241309690 LFA1 TRANSFAC yes 22247830
chr2 241309686 241309690 LFA1 TRANSFAC yes 82279508
chr2 241309697 241309707 SREBF2 JASPAR yes 22247831
chr2 241309697 241309707 SREBF2 JASPAR yes 82279509
chr2 241309699 241309714 RUNX2 JASPAR yes 22247832
chr2 241309699 241309714 RUNX2 JASPAR yes 82279510
chr2 241309716 241309721 ETS2 TRANSFAC yes 22247833
chr2 241309716 241309721 ETS2 TRANSFAC yes 82279511
chr2 241309723 241309733 TFAP4 JASPAR yes 22247834
chr2 241309723 241309733 TFAP4 JASPAR yes 82279512
chr2 241309728 241309732 NFE TRANSFAC yes 22247835
chr2 241309728 241309732 NFE TRANSFAC yes 82279513
chr2 241309738 241309747 ZEB1 JASPAR yes 22247836
chr2 241309738 241309747 ZEB1 JASPAR yes 82279514
chr2 241309738 241309750 NHLH1 JASPAR yes 22247837
chr2 241309738 241309750 NHLH1 JASPAR yes 82279515
chr2 241309739 241309749 ID4 JASPAR yes 22247838
chr2 241309739 241309749 NHLH1 JASPAR yes 22247839
chr2 241309739 241309749 TCF3 JASPAR yes 22247840
chr2 241309739 241309749 TCF4 JASPAR yes 22247841
chr2 241309739 241309749 ID4 JASPAR yes 82279516
chr2 241309739 241309749 NHLH1 JASPAR yes 82279517
chr2 241309739 241309749 TCF3 JASPAR yes 82279518
chr2 241309739 241309749 TCF4 JASPAR yes 82279519
chr2 241309740 241309749 SNAI2 JASPAR yes 22247842
chr2 241309740 241309749 SNAI2 JASPAR yes 82279520
chr2 241309741 241309746 USF2 TRANSFAC yes 22247843
chr2 241309741 241309746 USF2 TRANSFAC yes 82279521
chr2 241309760 241309768 TEAD3 JASPAR yes 22247844
chr2 241309760 241309768 TEAD3 JASPAR yes 82279522
chr2 241309767 241309776 THAP1 JASPAR yes 22247845
chr2 241309767 241309776 THAP1 JASPAR yes 82279523
chr2 241309772 241309786 ZIC1 JASPAR yes 22247846
chr2 241309772 241309786 ZIC1 JASPAR yes 82279524
chr2 241309790 241309793 MYB TRANSFAC yes 22247847
chr2 241309790 241309793 MYB TRANSFAC yes 82279525
chr2 241309805 241309816 GCM1 JASPAR yes 22247848
chr2 241309805 241309816 GCM1 JASPAR yes 82279526
chr2 241309806 241309816 GCM2 JASPAR yes 22247849
chr2 241309806 241309816 GCM2 JASPAR yes 82279527
chr2 241309840 241309854 PLAG1 JASPAR yes 22247850
chr2 241309840 241309854 PLAG1 JASPAR yes 82279528
chr2 241309859 241309871 TFAP2A JASPAR yes 22247851
chr2 241309859 241309871 TFAP2B JASPAR yes 22247852
chr2 241309859 241309871 TFAP2C JASPAR yes 22247853
chr2 241309859 241309871 TFAP2A JASPAR yes 82279529
chr2 241309859 241309871 TFAP2B JASPAR yes 82279530
chr2 241309859 241309871 TFAP2C JASPAR yes 82279531
chr2 241309877 241309897 TP63 JASPAR yes 22247854
chr2 241309877 241309897 TP63 JASPAR yes 82279532
chr2 241309878 241309896 TP53 JASPAR yes 22247855
chr2 241309878 241309896 TP63 JASPAR yes 22247856
chr2 241309878 241309896 TP53 JASPAR yes 82279533
chr2 241309878 241309896 TP63 JASPAR yes 82279534
chr2 241309895 241309911 ZNF143 JASPAR yes 22247857
chr2 241309895 241309911 ZNF143 JASPAR yes 82279535
chr2 241309897 241309916 REST JASPAR yes 22247858
chr2 241309897 241309916 REST JASPAR yes 82279536
chr2 241309926 241309944 ESR1 JASPAR yes 22247859
chr2 241309926 241309944 ESR1 JASPAR yes 82279537
chr2 241309945 241309960 ZIC3 JASPAR yes 22247860
chr2 241309945 241309960 ZIC4 JASPAR yes 22247861
chr2 241309945 241309960 ZIC3 JASPAR yes 82279538
chr2 241309945 241309960 ZIC4 JASPAR yes 82279539
chr2 241309945 241309964 REST JASPAR yes 22247862
chr2 241309945 241309964 REST JASPAR yes 82279540
SNP sites on vista35546[chr2:241309624-241309945]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 241309702 rs112711947 C G,T
RUNX2 SREBF2
6500264
chr2 241309754 rs115153014 C T no 6500265
chr2 241309795 rs116146587 G A,C no 6500266
chr2 241309857 rs375520278 G A no 6500267
Genes possibly regulated by vista35546[chr2:241309624-241309945]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 241375088 241407493 + GPC1 ENSG00000063660.4 241375088 0.61 1.0 3321 34857
chr2 241388732 241396131 - AC110619.2 ENSG00000218416.3 241396131 0.96 1.0 3322 13814
Expression level of Genes
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miRNAs possibly regulated by vista35546[chr2:241309624-241309945]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr2 241395473 241395493 + hsa-miR-149-3p MIMAT0004609 241375106 6.123136270397697e-05 0.913792 0.570949 1028
Expression level of miRNAs
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