EnhancerDB
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  3. vista35550[chr2:241374162-241374480]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35550[chr2:241374162-241374480]
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Tissue distribution of vista35550
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Transcription factor that possibly regulate vista35550[chr2:241374162-241374480]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 241373208 241375394 POLR2A UCSC Txn Factor no Conserved 108436044
chr2 241373208 241375394 POLR2A UCSC Txn Factor no Conserved 108436045
chr2 241374096 241374752 E2F1 UCSC Txn Factor no Conserved 108436048
chr2 241374173 241374194 ZNF263 JASPAR yes 22248047
chr2 241374176 241374197 ZNF263 JASPAR yes 22248048
chr2 241374187 241374197 SP1 JASPAR yes 22248049
chr2 241374202 241374212 HMBOX1 JASPAR yes 22248050
chr2 241374204 241374207 MYB TRANSFAC yes 22248051
chr2 241374219 241374240 ZNF263 JASPAR yes 22248052
chr2 241374227 241374231 NFE TRANSFAC yes 22248053
chr2 241374228 241374233 GATA2 JASPAR yes 22248054
chr2 241374234 241374245 EBF1 JASPAR yes 22248055
chr2 241374239 241374252 NR2F1 JASPAR yes 22248056
chr2 241374239 241374259 PPARG JASPAR yes 22248057
chr2 241374240 241374258 ESR2 JASPAR yes 22248058
chr2 241374242 241374257 ESR2 JASPAR yes 22248059
chr2 241374243 241374247 ESR1 TRANSFAC yes 22248060
chr2 241374243 241374254 USF1 JASPAR yes 22248061
chr2 241374255 241374275 RREB1 JASPAR yes 22248062
chr2 241374283 241374292 SP1 TRANSFAC yes 22248063
chr2 241374286 241374292 NFE2 TRANSFAC yes 22248064
chr2 241374319 241374335 GLIS1 JASPAR yes 22248065
chr2 241374320 241374334 GLIS3 JASPAR yes 22248066
chr2 241374328 241374341 NFKB2 JASPAR yes 22248067
chr2 241374330 241374334 ESR1 TRANSFAC yes 22248068
chr2 241374334 241374344 ZNF740 JASPAR yes 22248069
chr2 241374335 241374345 ZNF740 JASPAR yes 22248070
chr2 241374335 241374355 RREB1 JASPAR yes 22248071
chr2 241374342 241374354 TAL1 JASPAR yes 22248072
chr2 241374343 241374355 PKNOX1 JASPAR yes 22248073
chr2 241374343 241374355 PKNOX2 JASPAR yes 22248074
chr2 241374343 241374355 TGIF1 JASPAR yes 22248075
chr2 241374343 241374355 TGIF2 JASPAR yes 22248076
chr2 241374343 241374356 ZBTB18 JASPAR yes 22248077
chr2 241374344 241374354 FIGLA JASPAR yes 22248078
chr2 241374344 241374354 MSC JASPAR yes 22248079
chr2 241374344 241374354 MYF6 JASPAR yes 22248080
chr2 241374344 241374354 TFAP4 JASPAR yes 22248081
chr2 241374348 241374356 MEIS2 JASPAR yes 22248082
chr2 241374348 241374356 MEIS3 JASPAR yes 22248083
chr2 241374349 241374353 NFE TRANSFAC yes 22248084
chr2 241374349 241374356 MEIS1 JASPAR yes 22248085
chr2 241374356 241374360 H4TF2 TRANSFAC yes 22248086
chr2 241374361 241374370 VENTX JASPAR yes 22248087
chr2 241374362 241374370 BARX1 JASPAR yes 22248088
chr2 241374368 241374380 TAL1 JASPAR yes 22248089
chr2 241374370 241374376 YY1 JASPAR yes 22248090
chr2 241374370 241374380 NEUROG2 JASPAR yes 22248091
chr2 241374438 241374458 RREB1 JASPAR yes 22248092
chr2 241374440 241374460 RREB1 JASPAR yes 22248093
chr2 241374441 241374461 RREB1 JASPAR yes 22248094
chr2 241374443 241374463 RREB1 JASPAR yes 22248095
chr2 241374444 241374459 RUNX2 JASPAR yes 22248096
chr2 241374445 241374455 RUNX3 JASPAR yes 22248097
SNP sites on vista35550[chr2:241374162-241374480]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 241374335 rs112083782 AC A
E2F1 GLIS1 NFKB2 POLR2A RREB1 ZNF740
6501082
chr2 241374353 rs74001635 T G
E2F1 FIGLA MEIS1 MEIS2 MEIS3 MSC MYF6 NFE PKNOX1 PKNOX2 POLR2A RREB1 TAL1 TFAP4 TGIF1 TGIF2 ZBTB18
6501083
chr2 241374428 rs62187173 T C
E2F1 POLR2A
6501084
Genes possibly regulated by vista35550[chr2:241374162-241374480]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 241375088 241407493 + GPC1 ENSG00000063660.4 241375088 0.61 1.0 3321 99392
chr2 241388732 241396131 - AC110619.2 ENSG00000218416.3 241396131 0.96 1.0 3322 78349
Expression level of Genes
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miRNAs possibly regulated by vista35550[chr2:241374162-241374480]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr2 241395473 241395493 + hsa-miR-149-3p MIMAT0004609 241375106 0.005069708491761723 0.913792 0.570949 1028
Expression level of miRNAs
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