EnhancerDB
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  3. vista3880[chr1:172291507-172291926]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3880[chr1:172291507-172291926]
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Tissue distribution of vista3880
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Transcription factor that possibly regulate vista3880[chr1:172291507-172291926]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 172291341 172292053 POLR2A UCSC Txn Factor no Conserved 107845531
chr1 172291400 172292216 EP300 UCSC Txn Factor no Conserved 107845536
chr1 172291407 172292104 TCF12 UCSC Txn Factor no Conserved 107845538
chr1 172291519 172291536 ZNF410 JASPAR yes 33122499
chr1 172291519 172291536 ZNF410 JASPAR yes 118398400
chr1 172291521 172291526 GATA2 JASPAR yes 33122500
chr1 172291521 172291526 GATA2 JASPAR yes 118398401
chr1 172291547 172291558 ESRRA JASPAR yes 33122501
chr1 172291547 172291558 ESRRB JASPAR yes 33122502
chr1 172291547 172291558 ESRRA JASPAR yes 118398402
chr1 172291547 172291558 ESRRB JASPAR yes 118398403
chr1 172291548 172291556 NR4A2 JASPAR yes 33122503
chr1 172291548 172291556 NR4A2 JASPAR yes 118398404
chr1 172291549 172291559 RORA JASPAR yes 33122504
chr1 172291549 172291559 RORA JASPAR yes 118398405
chr1 172291569 172291575 NFE2 TRANSFAC yes 33122505
chr1 172291569 172291575 NFE2 TRANSFAC yes 118398406
chr1 172291578 172291592 JUN JASPAR yes 33122506
chr1 172291578 172291592 JUN JASPAR yes 118398407
chr1 172291580 172291591 BATF JASPAR yes 33122507
chr1 172291580 172291591 BATF JASPAR yes 118398408
chr1 172291582 172291593 FOS JASPAR yes 33122508
chr1 172291582 172291593 JUND JASPAR yes 33122509
chr1 172291582 172291593 NFE2 JASPAR yes 33122510
chr1 172291582 172291593 FOS JASPAR yes 118398409
chr1 172291582 172291593 JUND JASPAR yes 118398410
chr1 172291582 172291593 NFE2 JASPAR yes 118398411
chr1 172291583 172291594 FOSL2 JASPAR yes 33122511
chr1 172291583 172291594 JUNB JASPAR yes 33122512
chr1 172291583 172291594 FOSL2 JASPAR yes 118398412
chr1 172291583 172291594 JUNB JASPAR yes 118398413
chr1 172291583 172291597 JUN JASPAR yes 33122513
chr1 172291583 172291597 JUN JASPAR yes 118398414
chr1 172291584 172291590 JUN TRANSFAC yes 33122514
chr1 172291584 172291590 JUN TRANSFAC yes 118398415
chr1 172291589 172291594 MYC TRANSFAC yes 33122515
chr1 172291589 172291594 MYC TRANSFAC yes 118398416
chr1 172291596 172291607 FOXC1 JASPAR yes 33122516
chr1 172291596 172291607 FOXC1 JASPAR yes 118398417
chr1 172291597 172291601 YY1 TRANSFAC yes 33122517
chr1 172291597 172291601 YY1 TRANSFAC yes 118398418
chr1 172291608 172291618 NEUROD2 JASPAR yes 33122518
chr1 172291608 172291618 OLIG1 JASPAR yes 33122519
chr1 172291608 172291618 OLIG2 JASPAR yes 33122520
chr1 172291608 172291618 OLIG3 JASPAR yes 33122521
chr1 172291608 172291618 NEUROD2 JASPAR yes 118398419
chr1 172291608 172291618 OLIG1 JASPAR yes 118398420
chr1 172291608 172291618 OLIG2 JASPAR yes 118398421
chr1 172291608 172291618 OLIG3 JASPAR yes 118398422
chr1 172291633 172291637 TEAD2 TRANSFAC yes 33122522
chr1 172291633 172291637 TEAD2 TRANSFAC yes 118398423
chr1 172291633 172291638 TBP TRANSFAC yes 33122523
chr1 172291633 172291638 TBP TRANSFAC yes 118398424
chr1 172291633 172291639 TMF TRANSFAC yes 33122524
chr1 172291633 172291639 TMF TRANSFAC yes 118398425
chr1 172291675 172291679 YY1 TRANSFAC yes 33122525
chr1 172291675 172291679 YY1 TRANSFAC yes 118398426
chr1 172291682 172291693 E2F1 JASPAR yes 33122526
chr1 172291682 172291693 E2F1 JASPAR yes 118398427
chr1 172291684 172291698 ZIC1 JASPAR yes 33122527
chr1 172291684 172291698 ZIC1 JASPAR yes 118398428
chr1 172291684 172291699 ZIC4 JASPAR yes 33122528
chr1 172291684 172291699 ZIC4 JASPAR yes 118398429
chr1 172291684 172291703 CTCF JASPAR yes 33122529
chr1 172291684 172291703 CTCF JASPAR yes 118398430
chr1 172291716 172291734 IRF2 JASPAR yes 33122530
chr1 172291716 172291734 IRF2 JASPAR yes 118398431
chr1 172291721 172291733 IRF1 JASPAR yes 33122531
chr1 172291721 172291733 IRF1 JASPAR yes 118398432
chr1 172291733 172291739 HiNF-A TRANSFAC yes 33122532
chr1 172291733 172291739 HiNF-A TRANSFAC yes 118398433
chr1 172291744 172291748 YY1 TRANSFAC yes 33122533
chr1 172291744 172291748 YY1 TRANSFAC yes 118398434
chr1 172291750 172291761 JUND JASPAR yes 33122534
chr1 172291750 172291761 JUND JASPAR yes 118398435
chr1 172291751 172291758 JUN TRANSFAC yes 33122535
chr1 172291751 172291758 JUN TRANSFAC yes 118398436
chr1 172291756 172291759 MYB TRANSFAC yes 33122536
chr1 172291756 172291759 MYB TRANSFAC yes 118398437
chr1 172291771 172291775 YY1 TRANSFAC yes 33122537
chr1 172291771 172291775 YY1 TRANSFAC yes 118398438
chr1 172291788 172291803 FOXA1 JASPAR yes 33122538
chr1 172291788 172291803 FOXA1 JASPAR yes 118398439
chr1 172291789 172291801 FOXI1 JASPAR yes 33122539
chr1 172291789 172291801 FOXI1 JASPAR yes 118398440
chr1 172291792 172291803 FOXA1 JASPAR yes 33122540
chr1 172291792 172291803 FOXA1 JASPAR yes 118398441
chr1 172291800 172291806 NFIC JASPAR yes 33122541
chr1 172291800 172291806 NFIC JASPAR yes 118398442
chr1 172291809 172291815 MZF1 JASPAR yes 33122542
chr1 172291809 172291815 MZF1 JASPAR yes 118398443
chr1 172291828 172291844 RFX5 JASPAR yes 33122543
chr1 172291828 172291844 RFX5 JASPAR yes 118398444
chr1 172291834 172291843 NFIX JASPAR yes 33122544
chr1 172291834 172291843 NFIX JASPAR yes 118398445
chr1 172291835 172291844 HIC2 JASPAR yes 33122545
chr1 172291835 172291844 HIC2 JASPAR yes 118398446
chr1 172291836 172291842 NFIC JASPAR yes 33122546
chr1 172291836 172291842 NFIC JASPAR yes 118398447
chr1 172291857 172291871 POU1F1 JASPAR yes 33122547
chr1 172291857 172291871 POU1F1 JASPAR yes 118398448
chr1 172291858 172291871 POU3F3 JASPAR yes 33122548
chr1 172291858 172291871 POU3F3 JASPAR yes 118398449
chr1 172291872 172291877 ETS2 TRANSFAC yes 33122549
chr1 172291872 172291877 ETS2 TRANSFAC yes 118398450
chr1 172291874 172291889 HSF1 JASPAR yes 33122550
chr1 172291874 172291889 HSF1 JASPAR yes 118398451
chr1 172291875 172291888 HSF1 JASPAR yes 33122551
chr1 172291875 172291888 HSF4 JASPAR yes 33122552
chr1 172291875 172291888 HSF1 JASPAR yes 118398452
chr1 172291875 172291888 HSF4 JASPAR yes 118398453
chr1 172291879 172291883 H4TF2 TRANSFAC yes 33122553
chr1 172291879 172291883 H4TF2 TRANSFAC yes 118398454
chr1 172291896 172291899 MYB TRANSFAC yes 33122554
chr1 172291896 172291899 MYB TRANSFAC yes 118398455
chr1 172291914 172291918 NFE TRANSFAC yes 33122555
chr1 172291914 172291918 NFE TRANSFAC yes 118398456
SNP sites on vista3880[chr1:172291507-172291926]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 172291533 rs6702094 G A
EP300 POLR2A TCF12 ZNF410
728030
chr1 172291583 rs189003323 A G,T
BATF EP300 FOS FOSL2 JUN JUNB JUND NFE2 POLR2A TCF12
728031
chr1 172291607 rs547960049 A G,T
EP300 FOXC1 POLR2A TCF12
728032
chr1 172291684 rs74962572 C T
CTCF E2F1 EP300 POLR2A TCF12 ZIC1 ZIC4
728033
chr1 172291896 rs140052098 G A
EP300 MYB POLR2A TCF12
728034
chr1 172291906 rs145018370 C T
EP300 POLR2A TCF12
728035
Genes possibly regulated by vista3880[chr1:172291507-172291926]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 172389828 172437971 + C1orf105 ENSG00000180999.6 172389828 0.96 0.91 1572 2098
Expression level of Genes
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miRNAs possibly regulated by vista3880[chr1:172291507-172291926]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results