EnhancerDB
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  3. vista3890[chr1:172466564-172466703]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3890[chr1:172466564-172466703]
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Tissue distribution of vista3890
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Transcription factor that possibly regulate vista3890[chr1:172466564-172466703]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 172466552 172466564 PKNOX1 JASPAR yes 33133516
chr1 172466552 172466564 PKNOX2 JASPAR yes 33133517
chr1 172466552 172466564 TGIF2 JASPAR yes 33133518
chr1 172466552 172466564 PKNOX1 JASPAR yes 118398961
chr1 172466552 172466564 PKNOX2 JASPAR yes 118398962
chr1 172466552 172466564 TGIF2 JASPAR yes 118398963
chr1 172466578 172466588 HMBOX1 JASPAR yes 33133519
chr1 172466578 172466588 HMBOX1 JASPAR yes 118398964
chr1 172466580 172466583 MYB TRANSFAC yes 33133520
chr1 172466580 172466583 MYB TRANSFAC yes 118398965
chr1 172466589 172466595 HiNF-A TRANSFAC yes 33133521
chr1 172466589 172466595 HiNF-A TRANSFAC yes 118398966
chr1 172466604 172466615 STAT3 JASPAR yes 33133522
chr1 172466604 172466615 STAT3 JASPAR yes 118398967
chr1 172466614 172466625 ELF5 JASPAR yes 33133523
chr1 172466614 172466625 ELF5 JASPAR yes 118398968
chr1 172466614 172466627 ELF1 JASPAR yes 33133524
chr1 172466614 172466627 ELF1 JASPAR yes 118398969
chr1 172466615 172466622 SPI1 JASPAR yes 33133525
chr1 172466615 172466622 SPI1 JASPAR yes 118398970
chr1 172466615 172466623 EHF JASPAR yes 33133526
chr1 172466615 172466623 EHF JASPAR yes 118398971
chr1 172466631 172466652 ZNF263 JASPAR yes 33133527
chr1 172466631 172466652 ZNF263 JASPAR yes 118398972
chr1 172466632 172466638 MZF1 JASPAR yes 33133528
chr1 172466632 172466638 MZF1 JASPAR yes 118398973
chr1 172466634 172466655 ZNF263 JASPAR yes 33133529
chr1 172466634 172466655 ZNF263 JASPAR yes 118398974
chr1 172466635 172466639 H1TF2 TRANSFAC yes 33133530
chr1 172466635 172466639 NFE TRANSFAC yes 33133531
chr1 172466635 172466639 SRF TRANSFAC yes 33133532
chr1 172466635 172466639 H1TF2 TRANSFAC yes 118398975
chr1 172466635 172466639 NFE TRANSFAC yes 118398976
chr1 172466635 172466639 SRF TRANSFAC yes 118398977
chr1 172466659 172466674 TFAP2A JASPAR yes 33133533
chr1 172466659 172466674 TFAP2A JASPAR yes 118398978
chr1 172466661 172466673 TFAP2A JASPAR yes 33133534
chr1 172466661 172466673 TFAP2B JASPAR yes 33133535
chr1 172466661 172466673 TFAP2C JASPAR yes 33133536
chr1 172466661 172466673 TFAP2A JASPAR yes 118398979
chr1 172466661 172466673 TFAP2B JASPAR yes 118398980
chr1 172466661 172466673 TFAP2C JASPAR yes 118398981
chr1 172466661 172466676 TFAP2A JASPAR yes 33133537
chr1 172466661 172466676 TFAP2C JASPAR yes 33133538
chr1 172466661 172466676 TFAP2A JASPAR yes 118398982
chr1 172466661 172466676 TFAP2C JASPAR yes 118398983
chr1 172466662 172466671 TFAP2A JASPAR yes 33133539
chr1 172466662 172466671 TFAP2A JASPAR yes 118398984
chr1 172466662 172466673 EBF1 JASPAR yes 33133540
chr1 172466662 172466673 EBF1 JASPAR yes 118398985
chr1 172466663 172466672 TFAP2A JASPAR yes 33133541
chr1 172466663 172466672 TFAP2A JASPAR yes 118398986
chr1 172466667 172466672 SP1 TRANSFAC yes 33133542
chr1 172466667 172466672 SP1 TRANSFAC yes 118398987
chr1 172466690 172466701 EBF1 JASPAR yes 33133543
chr1 172466690 172466701 EBF1 JASPAR yes 118398988
SNP sites on vista3890[chr1:172466564-172466703]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
Genes possibly regulated by vista3890[chr1:172466564-172466703]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 172339329 172413230 - PIGC ENSG00000135845.5 172413230 0.69 0.99 1571 46666
chr1 172389828 172437971 + C1orf105 ENSG00000180999.6 172389828 0.96 0.91 1572 23264
chr1 172501489 172580971 + SUCO ENSG00000094975.9 172501489 0.73 0.99 1573 65214
Expression level of Genes
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miRNAs possibly regulated by vista3890[chr1:172466564-172466703]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results