EnhancerDB
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  3. vista393[chr1:12236326-12236421]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista393[chr1:12236326-12236421]
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Tissue distribution of vista393
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Transcription factor that possibly regulate vista393[chr1:12236326-12236421]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 12236329 12236333 NFE TRANSFAC yes 26806399
chr1 12236329 12236333 NFE TRANSFAC yes 118232231
chr1 12236333 12236343 TFAP4 JASPAR yes 26806400
chr1 12236333 12236343 TFAP4 JASPAR yes 118232232
chr1 12236338 12236342 NFE TRANSFAC yes 26806401
chr1 12236338 12236342 NFE TRANSFAC yes 118232233
chr1 12236365 12236370 TFAP2A TRANSFAC yes 26806402
chr1 12236365 12236370 TFAP2A TRANSFAC yes 118232234
chr1 12236365 12236371 MZF1 JASPAR yes 26806403
chr1 12236365 12236371 MZF1 JASPAR yes 118232235
chr1 12236368 12236386 IRF2 JASPAR yes 26806404
chr1 12236368 12236386 IRF2 JASPAR yes 118232236
chr1 12236373 12236381 MEIS2 JASPAR yes 26806405
chr1 12236373 12236381 MEIS3 JASPAR yes 26806406
chr1 12236373 12236381 MEIS2 JASPAR yes 118232237
chr1 12236373 12236381 MEIS3 JASPAR yes 118232238
chr1 12236397 12236414 RXRA JASPAR yes 26806407
chr1 12236397 12236414 RXRA JASPAR yes 118232239
SNP sites on vista393[chr1:12236326-12236421]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 12236326 rs111721409 AG A no 84508
chr1 12236326 rs944205234 AG A no 84509
Genes possibly regulated by vista393[chr1:12236326-12236421]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 12227060 12269285 + TNFRSF1B ENSG00000028137.12 12227060 0.88 0.96 167 90734
chr1 12290124 12572099 + VPS13D ENSG00000048707.9 12290124 0.64 1.0 168 46297
Expression level of Genes
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miRNAs possibly regulated by vista393[chr1:12236326-12236421]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results