EnhancerDB
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  3. vista3933[chr1:172959872-172960111]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3933[chr1:172959872-172960111]
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Tissue distribution of vista3933
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Transcription factor that possibly regulate vista3933[chr1:172959872-172960111]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 172959862 172959877 NR2C2 JASPAR yes 33175783
chr1 172959862 172959877 NR2C2 JASPAR yes 118400978
chr1 172959863 172959877 NR2F1 JASPAR yes 33175784
chr1 172959863 172959877 RXRB JASPAR yes 33175785
chr1 172959863 172959877 RXRG JASPAR yes 33175786
chr1 172959863 172959877 NR2F1 JASPAR yes 118400979
chr1 172959863 172959877 RXRB JASPAR yes 118400980
chr1 172959863 172959877 RXRG JASPAR yes 118400981
chr1 172959867 172959877 RORA JASPAR yes 33175787
chr1 172959867 172959877 RORA JASPAR yes 118400982
chr1 172959870 172959887 ESR1 JASPAR yes 33175788
chr1 172959870 172959887 ESR1 JASPAR yes 118400983
chr1 172959872 172959876 ESR1 TRANSFAC yes 33175789
chr1 172959872 172959876 ESR1 TRANSFAC yes 118400984
chr1 172959881 172959887 MYC TRANSFAC yes 33175790
chr1 172959881 172959887 MYC TRANSFAC yes 118400985
chr1 172959895 172959910 STAT1 JASPAR yes 33175791
chr1 172959895 172959910 STAT1 JASPAR yes 118400986
chr1 172959897 172959908 STAT1 JASPAR yes 33175792
chr1 172959897 172959908 STAT1 JASPAR yes 118400987
chr1 172959901 172959911 TEAD1 JASPAR yes 33175793
chr1 172959901 172959911 TEAD4 JASPAR yes 33175794
chr1 172959901 172959911 TEAD1 JASPAR yes 118400988
chr1 172959901 172959911 TEAD4 JASPAR yes 118400989
chr1 172959902 172959910 TEAD3 JASPAR yes 33175795
chr1 172959902 172959910 TEAD3 JASPAR yes 118400990
chr1 172959923 172959927 YY1 TRANSFAC yes 33175796
chr1 172959923 172959927 YY1 TRANSFAC yes 118400991
chr1 172959925 172959940 RUNX2 JASPAR yes 33175797
chr1 172959925 172959940 RUNX2 JASPAR yes 118400992
chr1 172959926 172959929 MYB TRANSFAC yes 33175798
chr1 172959926 172959929 MYB TRANSFAC yes 118400993
chr1 172959926 172959935 RUNX2 JASPAR yes 33175799
chr1 172959926 172959935 RUNX2 JASPAR yes 118400994
chr1 172959926 172959936 RUNX3 JASPAR yes 33175800
chr1 172959926 172959936 RUNX3 JASPAR yes 118400995
chr1 172959926 172959937 RUNX1 JASPAR yes 33175801
chr1 172959926 172959937 RUNX1 JASPAR yes 118400996
chr1 172959929 172959944 FOXP1 JASPAR yes 33175802
chr1 172959929 172959944 FOXP1 JASPAR yes 118400997
chr1 172959930 172959941 HOXA10 JASPAR yes 33175803
chr1 172959930 172959941 HOXA10 JASPAR yes 118400998
chr1 172959931 172959940 CDX1 JASPAR yes 33175804
chr1 172959931 172959940 CDX1 JASPAR yes 118400999
chr1 172959931 172959941 HOXA13 JASPAR yes 33175805
chr1 172959931 172959941 HOXB13 JASPAR yes 33175806
chr1 172959931 172959941 HOXD13 JASPAR yes 33175807
chr1 172959931 172959941 HOXA13 JASPAR yes 118401000
chr1 172959931 172959941 HOXB13 JASPAR yes 118401001
chr1 172959931 172959941 HOXD13 JASPAR yes 118401002
chr1 172959931 172959946 FOXP1 JASPAR yes 33175808
chr1 172959931 172959946 FOXP1 JASPAR yes 118401003
chr1 172959932 172959947 FOXP1 JASPAR yes 33175809
chr1 172959932 172959947 FOXP1 JASPAR yes 118401004
chr1 172959932 172959953 IRF1 JASPAR yes 33175810
chr1 172959932 172959953 IRF1 JASPAR yes 118401005
chr1 172959933 172959948 FOXP1 JASPAR yes 33175811
chr1 172959933 172959948 FOXP1 JASPAR yes 118401006
chr1 172959935 172959941 TBP TRANSFAC yes 33175812
chr1 172959935 172959941 TBP TRANSFAC yes 118401007
chr1 172959936 172959951 STAT2 JASPAR yes 33175813
chr1 172959936 172959951 STAT2 JASPAR yes 118401008
chr1 172959954 172959958 YY1 TRANSFAC yes 33175814
chr1 172959954 172959958 YY1 TRANSFAC yes 118401009
chr1 172959959 172959963 YY1 TRANSFAC yes 33175815
chr1 172959959 172959963 YY1 TRANSFAC yes 118401010
chr1 172959965 172959980 MEF2C JASPAR yes 33175816
chr1 172959965 172959980 MEF2C JASPAR yes 118401011
chr1 172959966 172959981 MEF2A JASPAR yes 33175817
chr1 172959966 172959981 MEF2A JASPAR yes 118401012
chr1 172959987 172959991 YY1 TRANSFAC yes 33175818
chr1 172959987 172959991 YY1 TRANSFAC yes 118401013
chr1 172960003 172960014 NFKB1 JASPAR yes 33175819
chr1 172960003 172960014 NFKB1 JASPAR yes 118401014
chr1 172960004 172960013 NF-kappaB TRANSFAC yes 33175820
chr1 172960004 172960013 NF-kappaB TRANSFAC yes 118401015
chr1 172960007 172960015 FEV JASPAR yes 33175821
chr1 172960007 172960015 FEV JASPAR yes 118401016
chr1 172960037 172960052 SCRT1 JASPAR yes 33175822
chr1 172960037 172960052 SCRT1 JASPAR yes 118401017
chr1 172960054 172960066 FOXI1 JASPAR yes 33175823
chr1 172960054 172960066 FOXI1 JASPAR yes 118401018
chr1 172960057 172960061 YY1 TRANSFAC yes 33175824
chr1 172960057 172960061 YY1 TRANSFAC yes 118401019
chr1 172960058 172960073 MEF2C JASPAR yes 33175825
chr1 172960058 172960073 MEF2C JASPAR yes 118401020
chr1 172960067 172960078 FOXH1 JASPAR yes 33175826
chr1 172960067 172960078 FOXH1 JASPAR yes 118401021
chr1 172960074 172960089 SOX21 JASPAR yes 33175827
chr1 172960074 172960089 SOX21 JASPAR yes 118401022
chr1 172960086 172960097 CDX2 JASPAR yes 33175828
chr1 172960086 172960097 CDX2 JASPAR yes 118401023
chr1 172960087 172960098 HOXA10 JASPAR yes 33175829
chr1 172960087 172960098 HOXC11 JASPAR yes 33175830
chr1 172960087 172960098 HOXC12 JASPAR yes 33175831
chr1 172960087 172960098 HOXC13 JASPAR yes 33175832
chr1 172960087 172960098 HOXD12 JASPAR yes 33175833
chr1 172960087 172960098 HOXA10 JASPAR yes 118401024
chr1 172960087 172960098 HOXC11 JASPAR yes 118401025
chr1 172960087 172960098 HOXC12 JASPAR yes 118401026
chr1 172960087 172960098 HOXC13 JASPAR yes 118401027
chr1 172960087 172960098 HOXD12 JASPAR yes 118401028
chr1 172960088 172960097 CDX1 JASPAR yes 33175834
chr1 172960088 172960097 CDX1 JASPAR yes 118401029
chr1 172960088 172960098 HOXA13 JASPAR yes 33175835
chr1 172960088 172960098 HOXB13 JASPAR yes 33175836
chr1 172960088 172960098 HOXC10 JASPAR yes 33175837
chr1 172960088 172960098 HOXD11 JASPAR yes 33175838
chr1 172960088 172960098 HOXD13 JASPAR yes 33175839
chr1 172960088 172960098 HOXA13 JASPAR yes 118401030
chr1 172960088 172960098 HOXB13 JASPAR yes 118401031
chr1 172960088 172960098 HOXC10 JASPAR yes 118401032
chr1 172960088 172960098 HOXD11 JASPAR yes 118401033
chr1 172960088 172960098 HOXD13 JASPAR yes 118401034
SNP sites on vista3933[chr1:172959872-172960111]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 172959936 rs11310581 TA T
CDX1 FOXP1 HOXA10 HOXA13 HOXB13 HOXD13 IRF1 RUNX1 RUNX2 RUNX3 STAT2 TBP
732622
chr1 172959936 rs398074422 TA T
CDX1 FOXP1 HOXA10 HOXA13 HOXB13 HOXD13 IRF1 RUNX1 RUNX2 RUNX3 STAT2 TBP
732623
chr1 172959936 rs71111048 TA T
CDX1 FOXP1 HOXA10 HOXA13 HOXB13 HOXD13 IRF1 RUNX1 RUNX2 RUNX3 STAT2 TBP
732624
chr1 172959964 rs141248482 A G no 732625
chr1 172960054 rs143511884 A T
FOXI1
732626
Genes possibly regulated by vista3933[chr1:172959872-172960111]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 173009100 173020103 - TNFSF18 ENSG00000120337.7 173020103 0.91 1.0 1575 40008
Expression level of Genes
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miRNAs possibly regulated by vista3933[chr1:172959872-172960111]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results