EnhancerDB
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  3. vista3939[chr1:173092552-173092771]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3939[chr1:173092552-173092771]
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Tissue distribution of vista3939
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Transcription factor that possibly regulate vista3939[chr1:173092552-173092771]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 173092169 173092810 TFAP2A UCSC Txn Factor no Conserved 107846578
chr1 173092169 173092810 TFAP2A UCSC Txn Factor no Conserved 107846579
chr1 173092506 173092721 SRF UCSC Txn Factor no Conserved 107846594
chr1 173092559 173092855 HNF4A UCSC Txn Factor no Conserved 107846600
chr1 173092567 173092582 AR JASPAR yes 33182048
chr1 173092567 173092582 AR JASPAR yes 118401315
chr1 173092586 173092590 H4TF2 TRANSFAC yes 33182049
chr1 173092586 173092590 H4TF2 TRANSFAC yes 118401316
chr1 173092610 173092628 SRF JASPAR yes 33182050
chr1 173092610 173092628 SRF JASPAR yes 118401317
chr1 173092612 173092628 SRF JASPAR yes 33182051
chr1 173092612 173092628 SRF JASPAR yes 118401318
chr1 173092612 173092630 SRF JASPAR yes 33182052
chr1 173092612 173092630 SRF JASPAR yes 118401319
chr1 173092613 173092625 SRF JASPAR yes 33182053
chr1 173092613 173092625 SRF JASPAR yes 118401320
chr1 173092615 173092627 SRF JASPAR yes 33182054
chr1 173092615 173092627 SRF JASPAR yes 118401321
chr1 173092687 173092694 NKX3-1 JASPAR yes 33182055
chr1 173092687 173092694 NKX3-1 JASPAR yes 118401322
chr1 173092693 173092703 SREBF2 JASPAR yes 33182056
chr1 173092693 173092703 SREBF2 JASPAR yes 118401323
chr1 173092693 173092704 USF1 JASPAR yes 33182057
chr1 173092693 173092704 USF2 JASPAR yes 33182058
chr1 173092693 173092704 USF1 JASPAR yes 118401324
chr1 173092693 173092704 USF2 JASPAR yes 118401325
chr1 173092695 173092708 NR2F1 JASPAR yes 33182059
chr1 173092695 173092708 NR2F1 JASPAR yes 118401326
chr1 173092698 173092706 NR4A2 JASPAR yes 33182060
chr1 173092698 173092706 NR4A2 JASPAR yes 118401327
chr1 173092705 173092720 HNF4A JASPAR yes 33182061
chr1 173092705 173092720 HNF4A JASPAR yes 118401328
chr1 173092706 173092720 RXRB JASPAR yes 33182062
chr1 173092706 173092720 RXRG JASPAR yes 33182063
chr1 173092706 173092720 RXRB JASPAR yes 118401329
chr1 173092706 173092720 RXRG JASPAR yes 118401330
chr1 173092706 173092721 HNF4G JASPAR yes 33182064
chr1 173092706 173092721 NR2C2 JASPAR yes 33182065
chr1 173092706 173092721 HNF4G JASPAR yes 118401331
chr1 173092706 173092721 NR2C2 JASPAR yes 118401332
chr1 173092713 173092730 RARA JASPAR yes 33182066
chr1 173092713 173092730 RARA JASPAR yes 118401333
chr1 173092721 173092736 TP53 JASPAR yes 33182067
chr1 173092721 173092736 TP53 JASPAR yes 118401334
chr1 173092733 173092738 TFAP2A TRANSFAC yes 33182068
chr1 173092733 173092738 TFAP2A TRANSFAC yes 118401335
chr1 173092733 173092739 MZF1 JASPAR yes 33182069
chr1 173092733 173092739 MZF1 JASPAR yes 118401336
chr1 173092735 173092740 ETS2 TRANSFAC yes 33182070
chr1 173092735 173092740 ETS2 TRANSFAC yes 118401337
chr1 173092737 173092756 RFX2 JASPAR yes 33182071
chr1 173092737 173092756 RFX2 JASPAR yes 118401338
chr1 173092741 173092757 RFX3 JASPAR yes 33182072
chr1 173092741 173092757 RFX5 JASPAR yes 33182073
chr1 173092741 173092757 RFX3 JASPAR yes 118401339
chr1 173092741 173092757 RFX5 JASPAR yes 118401340
SNP sites on vista3939[chr1:173092552-173092771]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 173092633 rs78912442 G T
HNF4A SRF TFAP2A
733215
chr1 173092650 rs568516593 G C
HNF4A SRF TFAP2A
733216
chr1 173092691 rs139098735 G C
HNF4A NKX3-1 SRF TFAP2A
733217
Genes possibly regulated by vista3939[chr1:173092552-173092771]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 173009100 173020103 - TNFSF18 ENSG00000120337.7 173020103 0.91 1.0 1575 27551
chr1 173152873 173176452 - TNFSF4 ENSG00000117586.6 173176452 0.87 0.97 1576 16319
Expression level of Genes
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miRNAs possibly regulated by vista3939[chr1:173092552-173092771]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results