EnhancerDB
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  3. vista3940[chr1:173164805-173165199]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3940[chr1:173164805-173165199]
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Tissue distribution of vista3940
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Transcription factor that possibly regulate vista3940[chr1:173164805-173165199]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 173164944 173165241 RUNX3 UCSC Txn Factor no Conserved 107846621
chr1 173164970 173165322 EBF1 UCSC Txn Factor no Conserved 107846624
chr1 173164797 173164811 RXRB JASPAR yes 33185453
chr1 173164797 173164811 RXRG JASPAR yes 33185454
chr1 173164797 173164811 RXRB JASPAR yes 118401341
chr1 173164797 173164811 RXRG JASPAR yes 118401342
chr1 173164809 173164813 YY1 TRANSFAC yes 33185455
chr1 173164809 173164813 YY1 TRANSFAC yes 118401343
chr1 173164813 173164825 PKNOX1 JASPAR yes 33185456
chr1 173164813 173164825 PKNOX2 JASPAR yes 33185457
chr1 173164813 173164825 TGIF1 JASPAR yes 33185458
chr1 173164813 173164825 TGIF2 JASPAR yes 33185459
chr1 173164813 173164825 PKNOX1 JASPAR yes 118401344
chr1 173164813 173164825 PKNOX2 JASPAR yes 118401345
chr1 173164813 173164825 TGIF1 JASPAR yes 118401346
chr1 173164813 173164825 TGIF2 JASPAR yes 118401347
chr1 173164813 173164828 HNF4G JASPAR yes 33185460
chr1 173164813 173164828 HNF4G JASPAR yes 118401348
chr1 173164814 173164824 NEUROG2 JASPAR yes 33185461
chr1 173164814 173164824 NEUROG2 JASPAR yes 118401349
chr1 173164816 173164820 YY1 TRANSFAC yes 33185462
chr1 173164816 173164820 YY1 TRANSFAC yes 118401350
chr1 173164834 173164839 GATA1 TRANSFAC yes 33185463
chr1 173164834 173164839 GATA1 TRANSFAC yes 118401351
chr1 173164857 173164865 FOXC1 JASPAR yes 33185464
chr1 173164857 173164865 FOXC1 JASPAR yes 118401352
chr1 173164871 173164885 SPI1 JASPAR yes 33185465
chr1 173164871 173164885 SPI1 JASPAR yes 118401353
chr1 173164872 173164885 ELF1 JASPAR yes 33185466
chr1 173164872 173164885 ELF1 JASPAR yes 118401354
chr1 173164873 173164885 EHF JASPAR yes 33185467
chr1 173164873 173164885 ELF1 JASPAR yes 33185468
chr1 173164873 173164885 ELF4 JASPAR yes 33185469
chr1 173164873 173164885 EHF JASPAR yes 118401355
chr1 173164873 173164885 ELF1 JASPAR yes 118401356
chr1 173164873 173164885 ELF4 JASPAR yes 118401357
chr1 173164873 173164886 ELF3 JASPAR yes 33185470
chr1 173164873 173164886 ELF3 JASPAR yes 118401358
chr1 173164874 173164885 ELF5 JASPAR yes 33185471
chr1 173164874 173164885 SPDEF JASPAR yes 33185472
chr1 173164874 173164885 ELF5 JASPAR yes 118401359
chr1 173164874 173164885 SPDEF JASPAR yes 118401360
chr1 173164875 173164882 ETS1 TRANSFAC yes 33185473
chr1 173164875 173164882 ETS1 TRANSFAC yes 118401361
chr1 173164875 173164885 ETV6 JASPAR yes 33185474
chr1 173164875 173164885 GABPA JASPAR yes 33185475
chr1 173164875 173164885 ETV6 JASPAR yes 118401362
chr1 173164875 173164885 GABPA JASPAR yes 118401363
chr1 173164875 173164886 ELK4 JASPAR yes 33185476
chr1 173164875 173164886 FLI1 JASPAR yes 33185477
chr1 173164875 173164886 ELK4 JASPAR yes 118401364
chr1 173164875 173164886 FLI1 JASPAR yes 118401365
chr1 173164876 173164884 EHF JASPAR yes 33185478
chr1 173164876 173164884 FEV JASPAR yes 33185479
chr1 173164876 173164884 EHF JASPAR yes 118401366
chr1 173164876 173164884 FEV JASPAR yes 118401367
chr1 173164877 173164884 SPI1 JASPAR yes 33185480
chr1 173164877 173164884 SPI1 JASPAR yes 118401368
chr1 173164882 173164897 HNF4A JASPAR yes 33185481
chr1 173164882 173164897 HNF4A JASPAR yes 118401369
chr1 173164883 173164898 HNF4G JASPAR yes 33185482
chr1 173164883 173164898 HNF4G JASPAR yes 118401370
chr1 173164915 173164920 ETS2 TRANSFAC yes 33185483
chr1 173164915 173164920 ETS2 TRANSFAC yes 118401371
chr1 173164930 173164948 RARA JASPAR yes 33185484
chr1 173164930 173164948 RARA JASPAR yes 118401372
chr1 173164955 173164960 SP1 TRANSFAC yes 33185485
chr1 173164955 173164960 SP1 TRANSFAC yes 118401373
chr1 173164958 173164962 LFA1 TRANSFAC yes 33185486
chr1 173164958 173164962 LFA1 TRANSFAC yes 118401374
chr1 173164975 173164994 CTCF JASPAR yes 33185487
chr1 173164975 173164994 CTCF JASPAR yes 118401375
chr1 173165013 173165019 HiNF-A TRANSFAC yes 33185488
chr1 173165013 173165019 HiNF-A TRANSFAC yes 118401376
chr1 173165015 173165028 ZBTB18 JASPAR yes 33185489
chr1 173165015 173165028 ZBTB18 JASPAR yes 118401377
chr1 173165027 173165032 TFAP2A TRANSFAC yes 33185490
chr1 173165027 173165032 TFAP2A TRANSFAC yes 118401378
chr1 173165027 173165033 MZF1 JASPAR yes 33185491
chr1 173165027 173165033 MZF1 JASPAR yes 118401379
chr1 173165027 173165038 NFKB1 JASPAR yes 33185492
chr1 173165027 173165038 NFKB1 JASPAR yes 118401380
chr1 173165027 173165040 NFKB1 JASPAR yes 33185493
chr1 173165027 173165040 NFKB2 JASPAR yes 33185494
chr1 173165027 173165040 NFKB1 JASPAR yes 118401381
chr1 173165027 173165040 NFKB2 JASPAR yes 118401382
chr1 173165028 173165038 NFKB1 JASPAR yes 33185495
chr1 173165028 173165038 NFKB1 JASPAR yes 118401383
chr1 173165028 173165039 NFKB1 JASPAR yes 33185496
chr1 173165028 173165039 NFKB1 JASPAR yes 118401384
chr1 173165029 173165039 NFKB1 JASPAR yes 33185497
chr1 173165029 173165039 NFKB1 JASPAR yes 118401385
chr1 173165034 173165040 MZF1 JASPAR yes 33185498
chr1 173165034 173165040 MZF1 JASPAR yes 118401386
chr1 173165063 173165081 RARA JASPAR yes 33185499
chr1 173165063 173165081 RARA JASPAR yes 118401387
chr1 173165088 173165102 TLX1 JASPAR yes 118401388
chr1 173165089 173165103 TLX1 JASPAR yes 118401389
chr1 173165095 173165104 NFIX JASPAR yes 118401390
chr1 173165096 173165105 HIC2 JASPAR yes 118401391
chr1 173165097 173165103 NFIC JASPAR yes 118401392
chr1 173165118 173165137 PAX5 JASPAR yes 118401393
chr1 173165120 173165134 TCF7L2 JASPAR yes 118401394
chr1 173165124 173165130 TCF4 TRANSFAC yes 118401395
chr1 173165128 173165143 JUND JASPAR yes 118401396
chr1 173165128 173165148 TP63 JASPAR yes 118401397
chr1 173165129 173165147 TP53 JASPAR yes 118401398
chr1 173165129 173165147 TP63 JASPAR yes 118401399
chr1 173165129 173165147 TP73 JASPAR yes 118401400
chr1 173165130 173165145 TP53 JASPAR yes 118401401
chr1 173165131 173165143 JDP2 JASPAR yes 118401402
chr1 173165131 173165146 JUND JASPAR yes 118401403
chr1 173165132 173165145 JUN JASPAR yes 118401404
chr1 173165133 173165141 CREB1 JASPAR yes 118401405
chr1 173165157 173165168 EBF1 JASPAR yes 118401406
chr1 173165164 173165169 SP1 TRANSFAC yes 118401407
chr1 173165171 173165186 PRDM1 JASPAR yes 118401408
chr1 173165177 173165192 PRDM1 JASPAR yes 118401409
SNP sites on vista3940[chr1:173164805-173165199]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 173164811 rs16845585 A C
RXRB RXRG YY1
733528
chr1 173164863 rs562886351 A AC
FOXC1
733529
chr1 173164957 rs114060539 G A
RUNX3 SP1
733530
chr1 173164974 rs543567379 G A
EBF1 RUNX3
733531
chr1 173164985 rs143904258 G A,C
CTCF EBF1 RUNX3
733532
chr1 173165041 rs72722850 G T
EBF1 RUNX3
733533
chr1 173165046 rs192147087 C T
EBF1 RUNX3
733534
chr1 173165083 rs11807842 G A,T
EBF1 RUNX3
733535
chr1 173165100 rs114214210 C T
EBF1 HIC2 NFIC NFIX RUNX3 TLX1
733536
Genes possibly regulated by vista3940[chr1:173164805-173165199]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 173152873 173176452 - TNFSF4 ENSG00000117586.6 173176452 0.87 0.97 1576 88747
Expression level of Genes
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miRNAs possibly regulated by vista3940[chr1:173164805-173165199]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results