EnhancerDB
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  3. vista395[chr1:12238984-12239461]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista395[chr1:12238984-12239461]
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Tissue distribution of vista395
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Transcription factor that possibly regulate vista395[chr1:12238984-12239461]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 12239009 12239026 RARA JASPAR yes 26806791
chr1 12239009 12239026 RARA JASPAR yes 118232410
chr1 12239018 12239027 THAP1 JASPAR yes 26806792
chr1 12239018 12239027 THAP1 JASPAR yes 118232411
chr1 12239020 12239041 ZNF263 JASPAR yes 26806793
chr1 12239020 12239041 ZNF263 JASPAR yes 118232412
chr1 12239021 12239025 LFA1 TRANSFAC yes 26806794
chr1 12239021 12239025 LFA1 TRANSFAC yes 118232413
chr1 12239027 12239048 ZNF263 JASPAR yes 26806795
chr1 12239027 12239048 ZNF263 JASPAR yes 118232414
chr1 12239030 12239040 SP1 JASPAR yes 26806796
chr1 12239030 12239040 SP1 JASPAR yes 118232415
chr1 12239030 12239051 ZNF263 JASPAR yes 26806797
chr1 12239030 12239051 ZNF263 JASPAR yes 118232416
chr1 12239031 12239038 CEBPA TRANSFAC yes 26806798
chr1 12239031 12239038 CEBPA TRANSFAC yes 118232417
chr1 12239088 12239093 SP1 TRANSFAC yes 26806799
chr1 12239088 12239093 SP1 TRANSFAC yes 118232418
chr1 12239112 12239116 YY1 TRANSFAC yes 26806800
chr1 12239112 12239116 YY1 TRANSFAC yes 118232419
chr1 12239126 12239131 ETS2 TRANSFAC yes 26806801
chr1 12239126 12239131 ETS2 TRANSFAC yes 118232420
chr1 12239145 12239154 HIC2 JASPAR yes 26806802
chr1 12239145 12239154 HIC2 JASPAR yes 118232421
chr1 12239156 12239162 LEF1 TRANSFAC yes 26806803
chr1 12239156 12239162 SOX10 JASPAR yes 26806804
chr1 12239156 12239162 LEF1 TRANSFAC yes 118232422
chr1 12239156 12239162 SOX10 JASPAR yes 118232423
chr1 12239169 12239173 YY1 TRANSFAC yes 26806805
chr1 12239169 12239173 YY1 TRANSFAC yes 118232424
chr1 12239177 12239183 SOX10 JASPAR yes 26806806
chr1 12239177 12239183 SOX10 JASPAR yes 118232425
chr1 12239194 12239204 TFCP2 JASPAR yes 26806807
chr1 12239194 12239204 TFCP2 JASPAR yes 118232426
chr1 12239195 12239206 ETV2 JASPAR yes 26806808
chr1 12239195 12239206 SPDEF JASPAR yes 26806809
chr1 12239195 12239206 ETV2 JASPAR yes 118232427
chr1 12239195 12239206 SPDEF JASPAR yes 118232428
chr1 12239196 12239205 ELK4 JASPAR yes 26806810
chr1 12239196 12239205 ELK4 JASPAR yes 118232429
chr1 12239196 12239206 ERG JASPAR yes 26806811
chr1 12239196 12239206 ETS1 JASPAR yes 26806812
chr1 12239196 12239206 FLI1 JASPAR yes 26806813
chr1 12239196 12239206 ERG JASPAR yes 118232430
chr1 12239196 12239206 ETS1 JASPAR yes 118232431
chr1 12239196 12239206 FLI1 JASPAR yes 118232432
chr1 12239199 12239204 GATA2 JASPAR yes 26806814
chr1 12239199 12239204 GATA2 JASPAR yes 118232433
chr1 12239212 12239222 GABPA JASPAR yes 26806815
chr1 12239212 12239222 GABPA JASPAR yes 118232434
chr1 12239212 12239225 ELF1 JASPAR yes 26806816
chr1 12239212 12239225 ELF1 JASPAR yes 118232435
chr1 12239218 12239222 NFE TRANSFAC yes 26806817
chr1 12239218 12239222 NFE TRANSFAC yes 118232436
chr1 12239218 12239231 SMAD2 JASPAR yes 26806818
chr1 12239218 12239231 SMAD2 JASPAR yes 118232437
chr1 12239222 12239228 NFE2 TRANSFAC yes 26806819
chr1 12239222 12239228 NFE2 TRANSFAC yes 118232438
chr1 12239234 12239238 YY1 TRANSFAC yes 26806820
chr1 12239234 12239238 YY1 TRANSFAC yes 118232439
chr1 12239234 12239250 RFX2 JASPAR yes 26806821
chr1 12239234 12239250 RFX3 JASPAR yes 26806822
chr1 12239234 12239250 RFX4 JASPAR yes 26806823
chr1 12239234 12239250 RFX5 JASPAR yes 26806824
chr1 12239234 12239250 RFX2 JASPAR yes 118232440
chr1 12239234 12239250 RFX3 JASPAR yes 118232441
chr1 12239234 12239250 RFX4 JASPAR yes 118232442
chr1 12239234 12239250 RFX5 JASPAR yes 118232443
chr1 12239235 12239254 RFX2 JASPAR yes 26806825
chr1 12239235 12239254 RFX2 JASPAR yes 118232444
chr1 12239308 12239312 ESR1 TRANSFAC yes 26806826
chr1 12239308 12239312 ESR1 TRANSFAC yes 118232445
chr1 12239315 12239323 EHF JASPAR yes 26806827
chr1 12239315 12239323 EHF JASPAR yes 118232446
chr1 12239321 12239324 MYB TRANSFAC yes 26806828
chr1 12239321 12239324 MYB TRANSFAC yes 118232447
chr1 12239324 12239334 NHLH1 JASPAR yes 26806829
chr1 12239324 12239334 NHLH1 JASPAR yes 118232448
chr1 12239335 12239342 SPIB JASPAR yes 26806830
chr1 12239335 12239342 SPIB JASPAR yes 118232449
chr1 12239361 12239382 REST JASPAR yes 26806831
chr1 12239361 12239382 REST JASPAR yes 118232450
chr1 12239364 12239372 MEIS2 JASPAR yes 26806832
chr1 12239364 12239372 MEIS3 JASPAR yes 26806833
chr1 12239364 12239372 MEIS2 JASPAR yes 118232451
chr1 12239364 12239372 MEIS3 JASPAR yes 118232452
chr1 12239365 12239369 NFE TRANSFAC yes 26806834
chr1 12239365 12239369 NFE TRANSFAC yes 118232453
chr1 12239367 12239388 REST JASPAR yes 26806835
chr1 12239367 12239388 REST JASPAR yes 118232454
chr1 12239377 12239396 RFX2 JASPAR yes 26806836
chr1 12239377 12239396 RFX2 JASPAR yes 118232455
chr1 12239381 12239397 RFX2 JASPAR yes 26806837
chr1 12239381 12239397 RFX3 JASPAR yes 26806838
chr1 12239381 12239397 RFX4 JASPAR yes 26806839
chr1 12239381 12239397 RFX5 JASPAR yes 26806840
chr1 12239381 12239397 RFX2 JASPAR yes 118232456
chr1 12239381 12239397 RFX3 JASPAR yes 118232457
chr1 12239381 12239397 RFX4 JASPAR yes 118232458
chr1 12239381 12239397 RFX5 JASPAR yes 118232459
chr1 12239396 12239406 SREBF2 JASPAR yes 26806841
chr1 12239396 12239406 SREBF2 JASPAR yes 118232460
chr1 12239417 12239436 REST JASPAR yes 26806842
chr1 12239417 12239436 REST JASPAR yes 118232461
SNP sites on vista395[chr1:12238984-12239461]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 12239027 rs17885508 G T
THAP1 ZNF263
84545
chr1 12239029 rs112768017 G A
ZNF263
84546
chr1 12239089 rs499646 G A
SP1
84547
chr1 12239151 rs5745975 C T
HIC2
84548
Genes possibly regulated by vista395[chr1:12238984-12239461]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 12227060 12269285 + TNFRSF1B ENSG00000028137.12 12227060 0.88 0.96 167 88076
chr1 12290124 12572099 + VPS13D ENSG00000048707.9 12290124 0.64 1.0 168 49337
Expression level of Genes
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miRNAs possibly regulated by vista395[chr1:12238984-12239461]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results