EnhancerDB
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  3. vista3953[chr1:173816933-173817269]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3953[chr1:173816933-173817269]
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Tissue distribution of vista3953
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Transcription factor that possibly regulate vista3953[chr1:173816933-173817269]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 173816936 173816950 RORA JASPAR yes 118401989
chr1 173816940 173816950 HMBOX1 JASPAR yes 118401990
chr1 173816961 173816973 PKNOX1 JASPAR yes 118401991
chr1 173816961 173816974 ZBTB18 JASPAR yes 118401992
chr1 173816962 173816972 MSC JASPAR yes 118401993
chr1 173816962 173816972 MYF6 JASPAR yes 118401994
chr1 173816962 173816972 NHLH1 JASPAR yes 118401995
chr1 173816962 173816972 TFAP4 JASPAR yes 118401996
chr1 173816967 173816971 NFE TRANSFAC yes 118401997
chr1 173816976 173816997 IRF1 JASPAR yes 118401998
chr1 173816978 173816999 IRF1 JASPAR yes 118401999
chr1 173816979 173817000 IRF1 JASPAR yes 118402000
chr1 173816980 173816995 FOXP1 JASPAR yes 118402001
chr1 173816980 173817001 IRF1 JASPAR yes 118402002
chr1 173816981 173816996 FOXP1 JASPAR yes 118402003
chr1 173816981 173817002 IRF1 JASPAR yes 118402004
chr1 173816982 173816997 FOXP1 JASPAR yes 118402005
chr1 173816982 173817003 IRF1 JASPAR yes 118402006
chr1 173816983 173816998 FOXP1 JASPAR yes 118402007
chr1 173816983 173817004 IRF1 JASPAR yes 118402008
chr1 173816984 173816999 FOXP1 JASPAR yes 118402009
chr1 173816984 173817005 IRF1 JASPAR yes 118402010
chr1 173816985 173817000 FOXP1 JASPAR yes 118402011
chr1 173816985 173817006 IRF1 JASPAR yes 118402012
chr1 173816986 173817001 FOXP1 JASPAR yes 118402013
chr1 173816986 173817007 IRF1 JASPAR yes 118402014
chr1 173816987 173817002 FOXP1 JASPAR yes 118402015
chr1 173816987 173817008 IRF1 JASPAR yes 118402016
chr1 173816988 173817003 FOXP1 JASPAR yes 118402017
chr1 173816989 173817004 FOXP1 JASPAR yes 118402018
chr1 173816990 173817005 FOXP1 JASPAR yes 118402019
chr1 173816991 173817006 FOXP1 JASPAR yes 118402020
chr1 173816992 173817007 FOXP1 JASPAR yes 118402021
chr1 173816993 173817008 FOXP1 JASPAR yes 118402022
chr1 173816994 173817009 FOXP1 JASPAR yes 118402023
chr1 173816995 173817010 FOXP1 JASPAR yes 118402024
chr1 173817016 173817035 PAX5 JASPAR yes 118402025
chr1 173817024 173817028 NFE TRANSFAC yes 118402026
chr1 173817048 173817060 YY1 JASPAR yes 118402027
chr1 173817051 173817057 YY1 JASPAR yes 118402028
chr1 173817071 173817080 SP1 TRANSFAC yes 118402029
chr1 173817072 173817080 SP1 TRANSFAC yes 118402030
chr1 173817072 173817082 SP1 JASPAR yes 118402031
chr1 173817093 173817114 ZNF263 JASPAR yes 118402032
chr1 173817139 173817151 GLI2 JASPAR yes 118402033
chr1 173817142 173817152 SP1 JASPAR yes 118402034
chr1 173817142 173817161 PAX5 JASPAR yes 118402035
chr1 173817145 173817150 SP1 TRANSFAC yes 118402036
chr1 173817162 173817177 MEF2C JASPAR yes 118402037
chr1 173817165 173817169 YY1 TRANSFAC yes 118402038
chr1 173817167 173817178 HOXC13 JASPAR yes 118402039
chr1 173817215 173817228 NR2F1 JASPAR yes 118402040
chr1 173817230 173817242 ZBTB7A JASPAR yes 118402041
chr1 173817231 173817236 SP1 TRANSFAC yes 118402042
chr1 173817234 173817248 PLAG1 JASPAR yes 118402043
chr1 173817255 173817260 SP1 TRANSFAC yes 118402044
SNP sites on vista3953[chr1:173816933-173817269]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 173816944 rs192728342 A C
HMBOX1 RORA
735858
chr1 173817064 rs58930477 C T no 735859
Genes possibly regulated by vista3953[chr1:173816933-173817269]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 173768688 173793858 - CENPL ENSG00000120334.11 173793858 0.84 0.99 1581 76925
chr1 173793641 173827684 + DARS2 ENSG00000117593.8 173793641 0.83 0.98 1582 76708
chr1 173837220 173872687 + ZBTB37 ENSG00000185278.10 173837220 0.77 0.99 1583 80049
chr1 173872947 173886516 - SERPINC1 ENSG00000117601.9 173886516 1.0 0.99 1584 30753
Expression level of Genes
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miRNAs possibly regulated by vista3953[chr1:173816933-173817269]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results