EnhancerDB
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  3. vista396[chr1:12240401-12240902]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista396[chr1:12240401-12240902]
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Tissue distribution of vista396
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Transcription factor that possibly regulate vista396[chr1:12240401-12240902]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 12240389 12240404 HNF4G JASPAR yes 26806978
chr1 12240389 12240404 NR2C2 JASPAR yes 26806979
chr1 12240389 12240404 HNF4G JASPAR yes 118232462
chr1 12240389 12240404 NR2C2 JASPAR yes 118232463
chr1 12240390 12240405 HNF4A JASPAR yes 26806980
chr1 12240390 12240405 HNF4A JASPAR yes 118232464
chr1 12240399 12240403 LFA1 TRANSFAC yes 26806981
chr1 12240399 12240403 LFA1 TRANSFAC yes 118232465
chr1 12240418 12240439 ZNF263 JASPAR yes 26806982
chr1 12240418 12240439 ZNF263 JASPAR yes 118232466
chr1 12240429 12240434 ETS2 TRANSFAC yes 26806983
chr1 12240429 12240434 ETS2 TRANSFAC yes 118232467
chr1 12240433 12240448 TFAP2C JASPAR yes 26806984
chr1 12240433 12240448 TFAP2C JASPAR yes 118232468
chr1 12240436 12240457 ZNF263 JASPAR yes 26806985
chr1 12240436 12240457 ZNF263 JASPAR yes 118232469
chr1 12240444 12240465 ZNF263 JASPAR yes 26806986
chr1 12240444 12240465 ZNF263 JASPAR yes 118232470
chr1 12240445 12240466 ZNF263 JASPAR yes 26806987
chr1 12240445 12240466 ZNF263 JASPAR yes 118232471
chr1 12240448 12240469 ZNF263 JASPAR yes 26806988
chr1 12240448 12240469 ZNF263 JASPAR yes 118232472
chr1 12240453 12240474 IRF1 JASPAR yes 26806989
chr1 12240453 12240474 IRF1 JASPAR yes 118232473
chr1 12240455 12240460 ETS2 TRANSFAC yes 26806990
chr1 12240455 12240460 ETS2 TRANSFAC yes 118232474
chr1 12240457 12240465 EHF JASPAR yes 26806991
chr1 12240457 12240465 EHF JASPAR yes 118232475
chr1 12240459 12240466 SPIB JASPAR yes 26806992
chr1 12240459 12240466 SPIB JASPAR yes 118232476
chr1 12240467 12240482 MEF2A JASPAR yes 26806993
chr1 12240467 12240482 MEF2A JASPAR yes 118232477
chr1 12240468 12240483 MEF2C JASPAR yes 26806994
chr1 12240468 12240483 MEF2C JASPAR yes 118232478
chr1 12240469 12240481 MEF2A JASPAR yes 26806995
chr1 12240469 12240481 MEF2B JASPAR yes 26806996
chr1 12240469 12240481 MEF2D JASPAR yes 26806997
chr1 12240469 12240481 MEF2A JASPAR yes 118232479
chr1 12240469 12240481 MEF2B JASPAR yes 118232480
chr1 12240469 12240481 MEF2D JASPAR yes 118232481
chr1 12240470 12240480 MEF2A JASPAR yes 26806998
chr1 12240470 12240480 MEF2A JASPAR yes 118232482
chr1 12240471 12240475 YY1 TRANSFAC yes 26806999
chr1 12240471 12240475 YY1 TRANSFAC yes 118232483
chr1 12240472 12240487 MEF2A JASPAR yes 26807000
chr1 12240472 12240487 MEF2A JASPAR yes 118232484
chr1 12240473 12240484 FOXB1 JASPAR yes 26807001
chr1 12240473 12240484 FOXC1 JASPAR yes 26807002
chr1 12240473 12240484 FOXB1 JASPAR yes 118232485
chr1 12240473 12240484 FOXC1 JASPAR yes 118232486
chr1 12240473 12240485 MEF2A JASPAR yes 26807003
chr1 12240473 12240485 MEF2D JASPAR yes 26807004
chr1 12240473 12240485 MEF2A JASPAR yes 118232487
chr1 12240473 12240485 MEF2D JASPAR yes 118232488
chr1 12240474 12240484 MEF2A JASPAR yes 26807005
chr1 12240474 12240484 MEF2A JASPAR yes 118232489
chr1 12240475 12240479 TEAD2 TRANSFAC yes 26807006
chr1 12240475 12240479 TEAD2 TRANSFAC yes 118232490
chr1 12240475 12240480 TBP TRANSFAC yes 26807007
chr1 12240475 12240480 TBP TRANSFAC yes 118232491
chr1 12240475 12240481 TMF TRANSFAC yes 26807008
chr1 12240475 12240481 TMF TRANSFAC yes 118232492
chr1 12240525 12240532 E2F1 TRANSFAC yes 26807009
chr1 12240525 12240532 E2F1 TRANSFAC yes 118232493
chr1 12240527 12240542 RFX5 JASPAR yes 26807010
chr1 12240527 12240542 RFX5 JASPAR yes 118232494
chr1 12240555 12240560 MYC TRANSFAC yes 26807011
chr1 12240555 12240560 MYC TRANSFAC yes 118232495
chr1 12240567 12240578 CEBPB JASPAR yes 26807012
chr1 12240567 12240578 CEBPB JASPAR yes 118232496
chr1 12240568 12240578 CEBPG JASPAR yes 26807013
chr1 12240568 12240578 CEBPG JASPAR yes 118232497
chr1 12240568 12240579 CEBPA JASPAR yes 26807014
chr1 12240568 12240579 CEBPA JASPAR yes 118232498
chr1 12240578 12240584 MZF1 JASPAR yes 26807015
chr1 12240578 12240584 MZF1 JASPAR yes 118232499
chr1 12240613 12240628 RFX5 JASPAR yes 26807016
chr1 12240613 12240628 RFX5 JASPAR yes 118232500
chr1 12240613 12240633 ESR1 JASPAR yes 26807017
chr1 12240613 12240633 ESR1 JASPAR yes 118232501
chr1 12240619 12240630 USF1 JASPAR yes 26807018
chr1 12240619 12240630 USF2 JASPAR yes 26807019
chr1 12240619 12240630 USF1 JASPAR yes 118232502
chr1 12240619 12240630 USF2 JASPAR yes 118232503
chr1 12240622 12240627 USF2 TRANSFAC yes 26807020
chr1 12240622 12240627 USF2 TRANSFAC yes 118232504
chr1 12240628 12240637 SP1 TRANSFAC yes 26807021
chr1 12240628 12240637 SP1 TRANSFAC yes 118232505
chr1 12240631 12240637 NFE2 TRANSFAC yes 26807022
chr1 12240631 12240637 NFE2 TRANSFAC yes 118232506
chr1 12240631 12240643 INSM1 JASPAR yes 26807023
chr1 12240631 12240643 INSM1 JASPAR yes 118232507
chr1 12240696 12240700 NFE TRANSFAC yes 26807024
chr1 12240696 12240700 NFE TRANSFAC yes 118232508
chr1 12240700 12240712 TAL1 JASPAR yes 26807025
chr1 12240700 12240712 TAL1 JASPAR yes 118232509
chr1 12240701 12240713 NHLH1 JASPAR yes 26807026
chr1 12240701 12240713 NHLH1 JASPAR yes 118232510
chr1 12240702 12240712 FIGLA JASPAR yes 26807027
chr1 12240702 12240712 MSC JASPAR yes 26807028
chr1 12240702 12240712 TFAP4 JASPAR yes 26807029
chr1 12240702 12240712 FIGLA JASPAR yes 118232511
chr1 12240702 12240712 MSC JASPAR yes 118232512
chr1 12240702 12240712 TFAP4 JASPAR yes 118232513
chr1 12240710 12240723 ELF1 JASPAR yes 26807030
chr1 12240710 12240723 ELF1 JASPAR yes 118232514
chr1 12240726 12240741 NR2C2 JASPAR yes 26807031
chr1 12240726 12240741 NR2C2 JASPAR yes 118232515
chr1 12240728 12240738 SP1 JASPAR yes 26807032
chr1 12240728 12240738 SP1 JASPAR yes 118232516
chr1 12240744 12240748 ESR1 TRANSFAC yes 26807033
chr1 12240744 12240748 ESR1 TRANSFAC yes 118232517
chr1 12240755 12240776 ZNF263 JASPAR yes 26807034
chr1 12240755 12240776 ZNF263 JASPAR yes 118232518
chr1 12240770 12240776 MAZ TRANSFAC yes 26807035
chr1 12240770 12240776 MAZ TRANSFAC yes 118232519
chr1 12240788 12240808 ESR1 JASPAR yes 26807036
chr1 12240788 12240808 ESR1 JASPAR yes 118232520
chr1 12240794 12240798 ESR1 TRANSFAC yes 26807037
chr1 12240794 12240798 ESR1 TRANSFAC yes 118232521
chr1 12240823 12240836 ELF1 JASPAR yes 26807038
chr1 12240823 12240836 ELF1 JASPAR yes 118232522
chr1 12240894 12240913 REST JASPAR yes 26807039
chr1 12240894 12240913 REST JASPAR yes 118232523
SNP sites on vista396[chr1:12240401-12240902]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 12240415 rs5745984 C G no 84559
chr1 12240596 rs5745985 A T no 84560
chr1 12240642 rs146019109 C A,T
INSM1
84561
chr1 12240676 rs3766730 G A no 84562
chr1 12240692 rs17880448 C T no 84563
chr1 12240722 rs5745987 T G
ELF1
84564
chr1 12240762 rs191420504 C T
ZNF263
84565
chr1 12240776 rs575013105 G A
MAZ ZNF263
84566
chr1 12240791 rs143739771 ACCGGGT A
ESR1
84567
chr1 12240808 rs143425018 C T
ESR1
84568
chr1 12240824 rs616645 T C,G
ELF1
84569
chr1 12240887 rs572159436 C T no 84570
chr1 12240890 rs3766728 A G no 84571
Genes possibly regulated by vista396[chr1:12240401-12240902]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 12227060 12269285 + TNFRSF1B ENSG00000028137.12 12227060 0.88 0.96 167 86659
chr1 12290124 12572099 + VPS13D ENSG00000048707.9 12290124 0.64 1.0 168 50778
Expression level of Genes
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miRNAs possibly regulated by vista396[chr1:12240401-12240902]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results