EnhancerDB
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  3. vista3970[chr1:175003106-175003396]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista3970[chr1:175003106-175003396]
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Tissue distribution of vista3970
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Transcription factor that possibly regulate vista3970[chr1:175003106-175003396]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 175003104 175003119 TFAP2A JASPAR yes 33265967
chr1 175003104 175003119 TFAP2C JASPAR yes 33265968
chr1 175003104 175003119 TFAP2A JASPAR yes 118402699
chr1 175003104 175003119 TFAP2C JASPAR yes 118402700
chr1 175003106 175003121 TFAP2A JASPAR yes 33265969
chr1 175003106 175003121 TFAP2A JASPAR yes 118402701
chr1 175003107 175003118 TFAP2A JASPAR yes 33265970
chr1 175003107 175003118 TFAP2B JASPAR yes 33265971
chr1 175003107 175003118 TFAP2C JASPAR yes 33265972
chr1 175003107 175003118 TFAP2A JASPAR yes 118402702
chr1 175003107 175003118 TFAP2B JASPAR yes 118402703
chr1 175003107 175003118 TFAP2C JASPAR yes 118402704
chr1 175003126 175003131 GATA1 TRANSFAC yes 33265973
chr1 175003126 175003131 GATA1 TRANSFAC yes 118402705
chr1 175003142 175003151 ZEB1 JASPAR yes 33265974
chr1 175003142 175003151 ZEB1 JASPAR yes 118402706
chr1 175003142 175003154 PKNOX1 JASPAR yes 33265975
chr1 175003142 175003154 PKNOX2 JASPAR yes 33265976
chr1 175003142 175003154 TGIF1 JASPAR yes 33265977
chr1 175003142 175003154 TGIF2 JASPAR yes 33265978
chr1 175003142 175003154 PKNOX1 JASPAR yes 118402707
chr1 175003142 175003154 PKNOX2 JASPAR yes 118402708
chr1 175003142 175003154 TGIF1 JASPAR yes 118402709
chr1 175003142 175003154 TGIF2 JASPAR yes 118402710
chr1 175003143 175003153 FIGLA JASPAR yes 33265979
chr1 175003143 175003153 ID4 JASPAR yes 33265980
chr1 175003143 175003153 TCF3 JASPAR yes 33265981
chr1 175003143 175003153 TCF4 JASPAR yes 33265982
chr1 175003143 175003153 FIGLA JASPAR yes 118402711
chr1 175003143 175003153 ID4 JASPAR yes 118402712
chr1 175003143 175003153 TCF3 JASPAR yes 118402713
chr1 175003143 175003153 TCF4 JASPAR yes 118402714
chr1 175003144 175003153 SNAI2 JASPAR yes 33265983
chr1 175003144 175003153 SNAI2 JASPAR yes 118402715
chr1 175003145 175003150 USF2 TRANSFAC yes 33265984
chr1 175003145 175003150 USF2 TRANSFAC yes 118402716
chr1 175003147 175003155 MEIS2 JASPAR yes 33265985
chr1 175003147 175003155 MEIS3 JASPAR yes 33265986
chr1 175003147 175003155 MEIS2 JASPAR yes 118402717
chr1 175003147 175003155 MEIS3 JASPAR yes 118402718
chr1 175003148 175003152 NFE TRANSFAC yes 33265987
chr1 175003148 175003152 NFE TRANSFAC yes 118402719
chr1 175003148 175003155 MEIS1 JASPAR yes 33265988
chr1 175003148 175003155 MEIS1 JASPAR yes 118402720
chr1 175003166 175003181 RFX5 JASPAR yes 33265989
chr1 175003166 175003181 RFX5 JASPAR yes 118402721
chr1 175003178 175003189 FLI1 JASPAR yes 33265990
chr1 175003178 175003189 FLI1 JASPAR yes 118402722
chr1 175003180 175003188 EHF JASPAR yes 33265991
chr1 175003180 175003188 EHF JASPAR yes 118402723
chr1 175003182 175003189 SPIB JASPAR yes 33265992
chr1 175003182 175003189 SPIB JASPAR yes 118402724
chr1 175003193 175003197 H1TF2 TRANSFAC yes 33265993
chr1 175003193 175003197 NFE TRANSFAC yes 33265994
chr1 175003193 175003197 SRF TRANSFAC yes 33265995
chr1 175003193 175003197 H1TF2 TRANSFAC yes 118402725
chr1 175003193 175003197 NFE TRANSFAC yes 118402726
chr1 175003193 175003197 SRF TRANSFAC yes 118402727
chr1 175003213 175003223 HMBOX1 JASPAR yes 33265996
chr1 175003213 175003223 HMBOX1 JASPAR yes 118402728
chr1 175003221 175003231 SP1 JASPAR yes 33265997
chr1 175003221 175003231 SP1 JASPAR yes 118402729
chr1 175003222 175003230 EHF JASPAR yes 33265998
chr1 175003222 175003230 EHF JASPAR yes 118402730
chr1 175003234 175003242 FOXO3 JASPAR yes 33265999
chr1 175003234 175003242 FOXO3 JASPAR yes 118402731
chr1 175003252 175003255 MYB TRANSFAC yes 33266000
chr1 175003252 175003255 MYB TRANSFAC yes 118402732
chr1 175003270 175003274 YY1 TRANSFAC yes 33266001
chr1 175003270 175003274 YY1 TRANSFAC yes 118402733
chr1 175003273 175003278 GATA2 JASPAR yes 33266002
chr1 175003273 175003278 GATA2 JASPAR yes 118402734
chr1 175003283 175003287 YY1 TRANSFAC yes 33266003
chr1 175003283 175003287 YY1 TRANSFAC yes 118402735
chr1 175003289 175003302 NR2F1 JASPAR yes 33266004
chr1 175003289 175003302 NR2F1 JASPAR yes 118402736
chr1 175003291 175003309 RARA JASPAR yes 33266005
chr1 175003291 175003309 RARA JASPAR yes 118402737
chr1 175003293 175003297 ESR1 TRANSFAC yes 33266006
chr1 175003293 175003297 ESR1 TRANSFAC yes 118402738
chr1 175003310 175003323 SMAD2 JASPAR yes 33266007
chr1 175003310 175003323 SMAD2 JASPAR yes 118402739
chr1 175003329 175003340 E2F6 JASPAR yes 33266008
chr1 175003329 175003340 E2F6 JASPAR yes 118402740
chr1 175003359 175003363 NFE TRANSFAC yes 33266009
chr1 175003359 175003363 NFE TRANSFAC yes 118402741
chr1 175003360 175003381 ZNF263 JASPAR yes 33266010
chr1 175003360 175003381 ZNF263 JASPAR yes 118402742
chr1 175003366 175003387 ZNF263 JASPAR yes 33266011
chr1 175003366 175003387 ZNF263 JASPAR yes 118402743
chr1 175003367 175003388 ZNF263 JASPAR yes 33266012
chr1 175003367 175003388 ZNF263 JASPAR yes 118402744
chr1 175003368 175003381 ELF1 JASPAR yes 33266013
chr1 175003368 175003381 ELF1 JASPAR yes 118402745
SNP sites on vista3970[chr1:175003106-175003396]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 175003151 rs147324157 G A
FIGLA ID4 MEIS1 MEIS2 MEIS3 NFE PKNOX1 PKNOX2 SNAI2 TCF3 TCF4 TGIF1 TGIF2 ZEB1
739919
chr1 175003268 rs190063415 A C no 739920
chr1 175003315 rs55722026 C T
SMAD2
739921
chr1 175003330 rs556046052 C T
E2F6
739922
chr1 175003359 rs141047099 G A
NFE
739923
Genes possibly regulated by vista3970[chr1:175003106-175003396]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 174968300 174980851 + CACYBP ENSG00000116161.13 174968300 0.9 0.98 1588 65194
chr1 174979925 174992561 - MRPS14 ENSG00000120333.4 174992561 0.75 0.99 1589 89455
chr1 175036994 175117202 + TNN ENSG00000120332.11 175036994 0.96 0.99 1590 66402
Expression level of Genes
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miRNAs possibly regulated by vista3970[chr1:175003106-175003396]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results