EnhancerDB
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  3. vista39871[chr3:8524896-8525313]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39871[chr3:8524896-8525313]
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Tissue distribution of vista39871
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Transcription factor that possibly regulate vista39871[chr3:8524896-8525313]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 8524890 8524905 NFYB JASPAR yes 294918
chr3 8524890 8524905 NFYB JASPAR yes 70933523
chr3 8524893 8524911 NFYA JASPAR yes 294919
chr3 8524893 8524911 NFYA JASPAR yes 70933524
chr3 8524897 8524901 H1TF2 TRANSFAC yes 294920
chr3 8524897 8524901 NFE TRANSFAC yes 294921
chr3 8524897 8524901 SRF TRANSFAC yes 294922
chr3 8524897 8524901 H1TF2 TRANSFAC yes 70933525
chr3 8524897 8524901 NFE TRANSFAC yes 70933526
chr3 8524897 8524901 SRF TRANSFAC yes 70933527
chr3 8524900 8524915 HNF4A JASPAR yes 294923
chr3 8524900 8524915 HNF4A JASPAR yes 70933528
chr3 8524901 8524915 RXRB JASPAR yes 294924
chr3 8524901 8524915 RXRB JASPAR yes 70933529
chr3 8524901 8524916 HNF4G JASPAR yes 294925
chr3 8524901 8524916 HNF4G JASPAR yes 70933530
chr3 8524914 8524925 EBF1 JASPAR yes 294926
chr3 8524914 8524925 EBF1 JASPAR yes 70933531
chr3 8524919 8524933 PLAG1 JASPAR yes 294927
chr3 8524919 8524933 PLAG1 JASPAR yes 70933532
chr3 8524920 8524934 PLAG1 JASPAR yes 294928
chr3 8524920 8524934 PLAG1 JASPAR yes 70933533
chr3 8524922 8524926 LFA1 TRANSFAC yes 294929
chr3 8524922 8524926 LFA1 TRANSFAC yes 70933534
chr3 8524930 8524935 SP1 TRANSFAC yes 294930
chr3 8524930 8524935 SP1 TRANSFAC yes 70933535
chr3 8524955 8524976 REST JASPAR yes 294931
chr3 8524955 8524976 REST JASPAR yes 70933536
chr3 8524956 8524975 REST JASPAR yes 294932
chr3 8524956 8524975 REST JASPAR yes 70933537
chr3 8524958 8524978 TP53 JASPAR yes 294933
chr3 8524958 8524978 TP53 JASPAR yes 70933538
chr3 8525021 8525025 H4TF2 TRANSFAC yes 294934
chr3 8525021 8525025 H4TF2 TRANSFAC yes 70933539
chr3 8525051 8525059 EHF JASPAR yes 294935
chr3 8525051 8525059 EHF JASPAR yes 70933540
chr3 8525052 8525059 SPI1 JASPAR yes 294936
chr3 8525052 8525059 SPI1 JASPAR yes 70933541
chr3 8525059 8525069 SMAD3 JASPAR yes 294937
chr3 8525059 8525069 SMAD3 JASPAR yes 70933542
chr3 8525074 8525089 SCRT1 JASPAR yes 294938
chr3 8525074 8525089 SCRT1 JASPAR yes 70933543
chr3 8525076 8525089 SCRT2 JASPAR yes 294939
chr3 8525076 8525089 SCRT2 JASPAR yes 70933544
chr3 8525116 8525119 MYB TRANSFAC yes 294940
chr3 8525116 8525119 MYB TRANSFAC yes 70933545
chr3 8525127 8525132 ETS2 TRANSFAC yes 294941
chr3 8525127 8525132 ETS2 TRANSFAC yes 70933546
chr3 8525148 8525157 NFIX JASPAR yes 294942
chr3 8525148 8525157 NFIX JASPAR yes 70933547
chr3 8525149 8525155 NFIC JASPAR yes 294943
chr3 8525149 8525155 NFIC JASPAR yes 70933548
chr3 8525149 8525163 TLX1 JASPAR yes 294944
chr3 8525149 8525163 TLX1 JASPAR yes 70933549
chr3 8525150 8525164 TLX1 JASPAR yes 294945
chr3 8525150 8525164 TLX1 JASPAR yes 70933550
chr3 8525167 8525174 JUN TRANSFAC yes 294946
chr3 8525167 8525174 JUN TRANSFAC yes 70933551
chr3 8525170 8525185 ZIC3 JASPAR yes 294947
chr3 8525170 8525185 ZIC4 JASPAR yes 294948
chr3 8525170 8525185 ZIC3 JASPAR yes 70933552
chr3 8525170 8525185 ZIC4 JASPAR yes 70933553
chr3 8525171 8525185 ZIC1 JASPAR yes 294949
chr3 8525171 8525185 ZIC1 JASPAR yes 70933554
chr3 8525177 8525188 E2F6 JASPAR yes 294950
chr3 8525177 8525188 E2F6 JASPAR yes 70933555
chr3 8525206 8525224 NR3C1 JASPAR yes 294951
chr3 8525206 8525224 NR3C1 JASPAR yes 70933556
chr3 8525207 8525214 SPIB JASPAR yes 294952
chr3 8525207 8525214 SPIB JASPAR yes 70933557
chr3 8525217 8525232 MAFK JASPAR yes 294953
chr3 8525217 8525232 MAFK JASPAR yes 70933558
chr3 8525234 8525246 NHLH1 JASPAR yes 294954
chr3 8525234 8525246 NHLH1 JASPAR yes 70933559
chr3 8525234 8525247 ZBTB18 JASPAR yes 294955
chr3 8525234 8525247 ZBTB18 JASPAR yes 70933560
chr3 8525235 8525245 NHLH1 JASPAR yes 294956
chr3 8525235 8525245 NHLH1 JASPAR yes 70933561
chr3 8525244 8525250 YY1 JASPAR yes 294957
chr3 8525244 8525250 YY1 JASPAR yes 70933562
chr3 8525261 8525270 NFIX JASPAR yes 294958
chr3 8525261 8525270 NFIX JASPAR yes 70933563
chr3 8525262 8525268 NFIC JASPAR yes 294959
chr3 8525262 8525268 NFIC JASPAR yes 70933564
chr3 8525284 8525290 LEF1 TRANSFAC yes 294960
chr3 8525284 8525290 SOX10 JASPAR yes 294961
chr3 8525284 8525290 LEF1 TRANSFAC yes 70933565
chr3 8525284 8525290 SOX10 JASPAR yes 70933566
chr3 8525284 8525299 FOXP1 JASPAR yes 294962
chr3 8525284 8525299 FOXP1 JASPAR yes 70933567
chr3 8525285 8525294 SRY JASPAR yes 294963
chr3 8525285 8525294 SRY JASPAR yes 70933568
chr3 8525285 8525296 FOXP2 JASPAR yes 294964
chr3 8525285 8525296 FOXP2 JASPAR yes 70933569
chr3 8525287 8525295 FOXO3 JASPAR yes 294965
chr3 8525287 8525295 FOXO3 JASPAR yes 70933570
chr3 8525294 8525300 HiNF-A TRANSFAC yes 294966
chr3 8525294 8525300 HiNF-A TRANSFAC yes 70933571
chr3 8525294 8525304 MAX JASPAR yes 294967
chr3 8525294 8525304 MAX JASPAR yes 70933572
chr3 8525295 8525305 CLOCK JASPAR yes 294968
chr3 8525295 8525305 CLOCK JASPAR yes 70933573
chr3 8525312 8525318 ZNF354C JASPAR yes 294969
chr3 8525312 8525318 ZNF354C JASPAR yes 70933574
SNP sites on vista39871[chr3:8524896-8525313]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 8524933 rs116040913 G A
PLAG1 SP1
6533928
chr3 8525010 rs115419281 C T no 6533929
chr3 8525012 rs542885123 GC G no 6533930
chr3 8525068 rs567309226 C A,T
SMAD3
6533931
chr3 8525197 rs188463389 C T no 6533932
chr3 8525281 rs77889207 C G no 6533933
Genes possibly regulated by vista39871[chr3:8524896-8525313]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 8543393 8609805 + LMCD1 ENSG00000071282.7 8543393 0.87 0.97 3372 81920
Expression level of Genes
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miRNAs possibly regulated by vista39871[chr3:8524896-8525313]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results