EnhancerDB
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  3. vista39872[chr3:8529087-8529361]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39872[chr3:8529087-8529361]
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Tissue distribution of vista39872
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Transcription factor that possibly regulate vista39872[chr3:8529087-8529361]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 8528494 8529118 TCF7L2 UCSC Txn Factor no Conserved 108528116
chr3 8529122 8529131 ZEB1 JASPAR yes 295439
chr3 8529122 8529131 ZEB1 JASPAR yes 70933575
chr3 8529124 8529135 FOSL1 JASPAR yes 295440
chr3 8529124 8529135 FOSL1 JASPAR yes 70933576
chr3 8529126 8529132 JUN TRANSFAC yes 295441
chr3 8529126 8529132 JUN TRANSFAC yes 70933577
chr3 8529132 8529145 NR2F1 JASPAR yes 295442
chr3 8529132 8529145 NR2F1 JASPAR yes 70933578
chr3 8529136 8529140 ESR1 TRANSFAC yes 295443
chr3 8529136 8529140 ESR1 TRANSFAC yes 70933579
chr3 8529162 8529165 MYB TRANSFAC yes 295444
chr3 8529162 8529165 MYB TRANSFAC yes 70933580
chr3 8529177 8529181 NFE TRANSFAC yes 295445
chr3 8529177 8529181 NFE TRANSFAC yes 70933581
chr3 8529183 8529198 MEF2C JASPAR yes 295446
chr3 8529183 8529198 MEF2C JASPAR yes 70933582
chr3 8529184 8529199 MEF2A JASPAR yes 295447
chr3 8529184 8529199 MEF2A JASPAR yes 70933583
chr3 8529185 8529197 MEF2A JASPAR yes 295448
chr3 8529185 8529197 MEF2B JASPAR yes 295449
chr3 8529185 8529197 MEF2D JASPAR yes 295450
chr3 8529185 8529197 MEF2A JASPAR yes 70933584
chr3 8529185 8529197 MEF2B JASPAR yes 70933585
chr3 8529185 8529197 MEF2D JASPAR yes 70933586
chr3 8529203 8529216 ZBTB18 JASPAR yes 295451
chr3 8529203 8529216 ZBTB18 JASPAR yes 70933587
chr3 8529205 8529215 ID4 JASPAR yes 295452
chr3 8529205 8529215 TCF3 JASPAR yes 295453
chr3 8529205 8529215 TCF4 JASPAR yes 295454
chr3 8529205 8529215 ID4 JASPAR yes 70933588
chr3 8529205 8529215 TCF3 JASPAR yes 70933589
chr3 8529205 8529215 TCF4 JASPAR yes 70933590
chr3 8529207 8529216 ZEB1 JASPAR yes 295455
chr3 8529207 8529216 ZEB1 JASPAR yes 70933591
chr3 8529208 8529216 TBX5 JASPAR yes 295456
chr3 8529208 8529216 TBX5 JASPAR yes 70933592
chr3 8529217 8529222 SP1 TRANSFAC yes 295457
chr3 8529217 8529222 SP1 TRANSFAC yes 70933593
chr3 8529217 8529226 HIC2 JASPAR yes 295458
chr3 8529217 8529226 HIC2 JASPAR yes 70933594
chr3 8529220 8529224 LFA1 TRANSFAC yes 295459
chr3 8529220 8529224 LFA1 TRANSFAC yes 70933595
chr3 8529220 8529235 SCRT1 JASPAR yes 295460
chr3 8529220 8529235 SCRT1 JASPAR yes 70933596
chr3 8529221 8529231 ID4 JASPAR yes 295461
chr3 8529221 8529231 TCF3 JASPAR yes 295462
chr3 8529221 8529231 TCF4 JASPAR yes 295463
chr3 8529221 8529231 ID4 JASPAR yes 70933597
chr3 8529221 8529231 TCF3 JASPAR yes 70933598
chr3 8529221 8529231 TCF4 JASPAR yes 70933599
chr3 8529222 8529231 SNAI2 JASPAR yes 295464
chr3 8529222 8529231 SNAI2 JASPAR yes 70933600
chr3 8529222 8529235 SCRT2 JASPAR yes 295465
chr3 8529222 8529235 SCRT2 JASPAR yes 70933601
chr3 8529223 8529228 USF2 TRANSFAC yes 295466
chr3 8529223 8529228 USF2 TRANSFAC yes 70933602
chr3 8529227 8529243 RFX4 JASPAR yes 295467
chr3 8529227 8529243 RFX4 JASPAR yes 70933603
chr3 8529228 8529247 RFX2 JASPAR yes 295468
chr3 8529228 8529247 RFX2 JASPAR yes 70933604
chr3 8529230 8529245 RFX5 JASPAR yes 295469
chr3 8529230 8529245 RFX5 JASPAR yes 70933605
chr3 8529245 8529266 ZNF263 JASPAR yes 295470
chr3 8529245 8529266 ZNF263 JASPAR yes 70933606
chr3 8529290 8529302 MYBL1 JASPAR yes 295471
chr3 8529290 8529302 MYBL1 JASPAR yes 70933607
chr3 8529293 8529303 HMBOX1 JASPAR yes 295472
chr3 8529293 8529303 HMBOX1 JASPAR yes 70933608
chr3 8529295 8529298 MYB TRANSFAC yes 295473
chr3 8529295 8529298 MYB TRANSFAC yes 70933609
chr3 8529326 8529330 LFA1 TRANSFAC yes 295474
chr3 8529326 8529330 LFA1 TRANSFAC yes 70933610
chr3 8529346 8529361 FOXP1 JASPAR yes 295475
chr3 8529346 8529361 FOXP1 JASPAR yes 70933611
chr3 8529347 8529362 FOXP1 JASPAR yes 295476
chr3 8529347 8529362 FOXP1 JASPAR yes 70933612
chr3 8529348 8529363 FOXP1 JASPAR yes 295477
chr3 8529348 8529363 FOXP1 JASPAR yes 70933613
chr3 8529348 8529369 IRF1 JASPAR yes 295478
chr3 8529348 8529369 IRF1 JASPAR yes 70933614
chr3 8529349 8529364 FOXP1 JASPAR yes 295479
chr3 8529349 8529364 FOXP1 JASPAR yes 70933615
chr3 8529351 8529366 FOXP1 JASPAR yes 295480
chr3 8529351 8529366 FOXP1 JASPAR yes 70933616
SNP sites on vista39872[chr3:8529087-8529361]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 8529148 rs575985849 C T no 6533976
chr3 8529169 rs113696805 G A no 6533977
chr3 8529267 rs545412320 G A no 6533978
chr3 8529349 rs373734488 C CA
FOXP1 IRF1
6533979
chr3 8529349 rs397818290 C CA
FOXP1 IRF1
6533980
chr3 8529349 rs61401718 C CA
FOXP1 IRF1
6533981
Genes possibly regulated by vista39872[chr3:8529087-8529361]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 8543393 8609805 + LMCD1 ENSG00000071282.7 8543393 0.87 0.97 3372 85968
Expression level of Genes
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miRNAs possibly regulated by vista39872[chr3:8529087-8529361]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results