EnhancerDB
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  3. vista39898[chr3:9452001-9452408]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39898[chr3:9452001-9452408]
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Tissue distribution of vista39898
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Transcription factor that possibly regulate vista39898[chr3:9452001-9452408]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 9452001 9452016 JUND JASPAR yes 349547
chr3 9452001 9452016 JUND JASPAR yes 70934664
chr3 9452002 9452015 JUN JASPAR yes 349548
chr3 9452002 9452015 JUN JASPAR yes 70934665
chr3 9452004 9452012 RHOXF1 JASPAR yes 349549
chr3 9452004 9452012 RHOXF1 JASPAR yes 70934666
chr3 9452007 9452021 POU1F1 JASPAR yes 349550
chr3 9452007 9452021 POU1F1 JASPAR yes 70934667
chr3 9452008 9452020 POU3F1 JASPAR yes 349551
chr3 9452008 9452020 POU3F2 JASPAR yes 349552
chr3 9452008 9452020 POU3F1 JASPAR yes 70934668
chr3 9452008 9452020 POU3F2 JASPAR yes 70934669
chr3 9452009 9452013 YY1 TRANSFAC yes 349553
chr3 9452009 9452013 YY1 TRANSFAC yes 70934670
chr3 9452014 9452026 SRF JASPAR yes 349554
chr3 9452014 9452026 SRF JASPAR yes 70934671
chr3 9452022 9452026 H4TF2 TRANSFAC yes 349555
chr3 9452022 9452026 H4TF2 TRANSFAC yes 70934672
chr3 9452043 9452057 CREB3L1 JASPAR yes 349556
chr3 9452043 9452057 CREB3L1 JASPAR yes 70934673
chr3 9452051 9452062 USF2 JASPAR yes 349557
chr3 9452051 9452062 USF2 JASPAR yes 70934674
chr3 9452051 9452065 TLX1 JASPAR yes 349558
chr3 9452051 9452065 TLX1 JASPAR yes 70934675
chr3 9452052 9452062 TFEB JASPAR yes 349559
chr3 9452052 9452062 TFEC JASPAR yes 349560
chr3 9452052 9452062 TFEB JASPAR yes 70934676
chr3 9452052 9452062 TFEC JASPAR yes 70934677
chr3 9452052 9452063 USF1 JASPAR yes 349561
chr3 9452052 9452063 USF1 JASPAR yes 70934678
chr3 9452056 9452074 SRF JASPAR yes 349562
chr3 9452056 9452074 SRF JASPAR yes 70934679
chr3 9452058 9452074 SRF JASPAR yes 349563
chr3 9452058 9452074 SRF JASPAR yes 70934680
chr3 9452058 9452076 SRF JASPAR yes 349564
chr3 9452058 9452076 SRF JASPAR yes 70934681
chr3 9452059 9452071 SRF JASPAR yes 349565
chr3 9452059 9452071 SRF JASPAR yes 70934682
chr3 9452060 9452072 MEF2B JASPAR yes 349566
chr3 9452060 9452072 MEF2D JASPAR yes 349567
chr3 9452060 9452072 MEF2B JASPAR yes 70934683
chr3 9452060 9452072 MEF2D JASPAR yes 70934684
chr3 9452061 9452071 MEF2A JASPAR yes 349568
chr3 9452061 9452071 MEF2A JASPAR yes 70934685
chr3 9452082 9452086 YY1 TRANSFAC yes 349569
chr3 9452082 9452086 YY1 TRANSFAC yes 70934686
chr3 9452082 9452093 CEBPA JASPAR yes 349570
chr3 9452082 9452093 CEBPA JASPAR yes 70934687
chr3 9452083 9452094 CEBPB JASPAR yes 349571
chr3 9452083 9452094 CEBPB JASPAR yes 70934688
chr3 9452087 9452097 REL JASPAR yes 349572
chr3 9452087 9452097 REL JASPAR yes 70934689
chr3 9452129 9452140 DMRT3 JASPAR yes 349573
chr3 9452129 9452140 DMRT3 JASPAR yes 70934690
chr3 9452144 9452159 HNF1A JASPAR yes 349574
chr3 9452144 9452159 HNF1A JASPAR yes 70934691
chr3 9452145 9452155 NOTO JASPAR yes 349575
chr3 9452145 9452155 NOTO JASPAR yes 70934692
chr3 9452145 9452158 HNF1B JASPAR yes 349576
chr3 9452145 9452158 HNF1B JASPAR yes 70934693
chr3 9452150 9452161 DMRT3 JASPAR yes 349577
chr3 9452150 9452161 DMRT3 JASPAR yes 70934694
chr3 9452153 9452174 IRF1 JASPAR yes 349578
chr3 9452153 9452174 IRF1 JASPAR yes 70934695
chr3 9452157 9452161 YY1 TRANSFAC yes 349579
chr3 9452157 9452161 YY1 TRANSFAC yes 70934696
chr3 9452159 9452180 IRF1 JASPAR yes 349580
chr3 9452159 9452180 IRF1 JASPAR yes 70934697
chr3 9452161 9452176 STAT2 JASPAR yes 349581
chr3 9452161 9452176 STAT2 JASPAR yes 70934698
chr3 9452178 9452188 GSC2 JASPAR yes 349582
chr3 9452178 9452188 GSC JASPAR yes 349583
chr3 9452178 9452188 GSC2 JASPAR yes 70934699
chr3 9452178 9452188 GSC JASPAR yes 70934700
chr3 9452179 9452187 OTX1 JASPAR yes 349584
chr3 9452179 9452187 OTX1 JASPAR yes 70934701
chr3 9452179 9452188 PITX3 JASPAR yes 349585
chr3 9452179 9452188 PITX3 JASPAR yes 70934702
chr3 9452180 9452195 IRF9 JASPAR yes 349586
chr3 9452180 9452195 IRF9 JASPAR yes 70934703
chr3 9452184 9452199 STAT2 JASPAR yes 349587
chr3 9452184 9452199 STAT2 JASPAR yes 70934704
chr3 9452188 9452194 TCF4 TRANSFAC yes 349588
chr3 9452188 9452194 TCF4 TRANSFAC yes 70934705
chr3 9452192 9452202 HOXC10 JASPAR yes 349589
chr3 9452192 9452202 HOXD11 JASPAR yes 349590
chr3 9452192 9452202 HOXC10 JASPAR yes 70934706
chr3 9452192 9452202 HOXD11 JASPAR yes 70934707
chr3 9452192 9452203 HOXA10 JASPAR yes 349591
chr3 9452192 9452203 HOXC11 JASPAR yes 349592
chr3 9452192 9452203 HOXC12 JASPAR yes 349593
chr3 9452192 9452203 HOXD12 JASPAR yes 349594
chr3 9452192 9452203 HOXA10 JASPAR yes 70934708
chr3 9452192 9452203 HOXC11 JASPAR yes 70934709
chr3 9452192 9452203 HOXC12 JASPAR yes 70934710
chr3 9452192 9452203 HOXD12 JASPAR yes 70934711
chr3 9452193 9452202 CDX1 JASPAR yes 349595
chr3 9452193 9452202 CDX1 JASPAR yes 70934712
chr3 9452193 9452204 CDX2 JASPAR yes 349596
chr3 9452193 9452204 CDX2 JASPAR yes 70934713
chr3 9452198 9452209 NFIL3 JASPAR yes 349597
chr3 9452198 9452209 NFIL3 JASPAR yes 70934714
chr3 9452199 9452211 DBP JASPAR yes 349598
chr3 9452199 9452211 HLF JASPAR yes 349599
chr3 9452199 9452211 DBP JASPAR yes 70934715
chr3 9452199 9452211 HLF JASPAR yes 70934716
chr3 9452200 9452212 POU2F1 JASPAR yes 349600
chr3 9452200 9452212 POU2F1 JASPAR yes 70934717
chr3 9452200 9452213 POU3F3 JASPAR yes 349601
chr3 9452200 9452213 POU3F3 JASPAR yes 70934718
chr3 9452200 9452214 POU1F1 JASPAR yes 349602
chr3 9452200 9452214 POU1F1 JASPAR yes 70934719
chr3 9452201 9452213 POU3F1 JASPAR yes 349603
chr3 9452201 9452213 POU3F2 JASPAR yes 349604
chr3 9452201 9452213 POU3F1 JASPAR yes 70934720
chr3 9452201 9452213 POU3F2 JASPAR yes 70934721
chr3 9452201 9452214 POU2F2 JASPAR yes 349605
chr3 9452201 9452214 POU2F2 JASPAR yes 70934722
chr3 9452202 9452210 FOXL1 JASPAR yes 349606
chr3 9452202 9452210 FOXL1 JASPAR yes 70934723
chr3 9452202 9452211 POU5F1B JASPAR yes 349607
chr3 9452202 9452211 POU5F1B JASPAR yes 70934724
chr3 9452209 9452225 SOX4 JASPAR yes 349608
chr3 9452209 9452225 SOX4 JASPAR yes 70934725
chr3 9452210 9452217 NKX3-1 JASPAR yes 349609
chr3 9452210 9452217 NKX3-1 JASPAR yes 70934726
chr3 9452213 9452223 BARHL2 JASPAR yes 349610
chr3 9452213 9452223 BARHL2 JASPAR yes 70934727
chr3 9452214 9452227 HNF1B JASPAR yes 349611
chr3 9452214 9452227 HNF1B JASPAR yes 70934728
chr3 9452220 9452235 HNF1A JASPAR yes 349612
chr3 9452220 9452235 HNF1A JASPAR yes 70934729
chr3 9452221 9452234 HNF1B JASPAR yes 349613
chr3 9452221 9452234 HNF1B JASPAR yes 70934730
chr3 9452224 9452239 PRDM1 JASPAR yes 349614
chr3 9452224 9452239 PRDM1 JASPAR yes 70934731
chr3 9452238 9452250 NHLH1 JASPAR yes 349615
chr3 9452238 9452250 NHLH1 JASPAR yes 70934732
chr3 9452249 9452253 TEAD2 TRANSFAC yes 349616
chr3 9452249 9452253 TEAD2 TRANSFAC yes 70934733
chr3 9452271 9452275 NFE TRANSFAC yes 349617
chr3 9452271 9452275 NFE TRANSFAC yes 70934734
chr3 9452272 9452277 GATA2 JASPAR yes 349618
chr3 9452272 9452277 GATA2 JASPAR yes 70934735
chr3 9452279 9452292 SMAD2 JASPAR yes 349619
chr3 9452279 9452292 SMAD2 JASPAR yes 70934736
chr3 9452283 9452298 HSF1 JASPAR yes 349620
chr3 9452283 9452298 HSF1 JASPAR yes 70934737
chr3 9452284 9452297 HSF4 JASPAR yes 349621
chr3 9452284 9452297 HSF4 JASPAR yes 70934738
chr3 9452285 9452295 FIGLA JASPAR yes 349622
chr3 9452285 9452295 FIGLA JASPAR yes 70934739
chr3 9452285 9452297 TAL1 JASPAR yes 349623
chr3 9452285 9452297 TAL1 JASPAR yes 70934740
chr3 9452302 9452306 NFE TRANSFAC yes 349624
chr3 9452302 9452306 NFE TRANSFAC yes 70934741
chr3 9452324 9452342 MAFF JASPAR yes 349625
chr3 9452324 9452342 MAFF JASPAR yes 70934742
chr3 9452363 9452373 ETV6 JASPAR yes 349626
chr3 9452363 9452373 ETV6 JASPAR yes 70934743
chr3 9452363 9452377 SPI1 JASPAR yes 349627
chr3 9452363 9452377 SPIC JASPAR yes 349628
chr3 9452363 9452377 SPI1 JASPAR yes 70934744
chr3 9452363 9452377 SPIC JASPAR yes 70934745
chr3 9452372 9452393 MAFG JASPAR yes 349629
chr3 9452372 9452393 MAFG JASPAR yes 70934746
chr3 9452387 9452391 YY1 TRANSFAC yes 349630
chr3 9452387 9452391 YY1 TRANSFAC yes 70934747
chr3 9452401 9452405 YY1 TRANSFAC yes 349631
chr3 9452401 9452405 YY1 TRANSFAC yes 70934748
SNP sites on vista39898[chr3:9452001-9452408]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 9452020 rs79839841 T C
POU1F1 POU3F1 POU3F2 SRF
6540110
chr3 9452158 rs76693466 C T
DMRT3 HNF1A HNF1B IRF1 YY1
6540111
chr3 9452174 rs145978276 T C
IRF1 STAT2
6540112
chr3 9452244 rs538733878 G C
NHLH1
6540113
Genes possibly regulated by vista39898[chr3:9452001-9452408]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 9022275 9404737 - SRGAP3 ENSG00000196220.11 9404737 0.88 1.0 3377 52736
chr3 9404526 9428475 + THUMPD3 ENSG00000134077.11 9404526 0.71 0.99 3378 52525
chr3 9439299 9520924 + SETD5 ENSG00000168137.11 9439299 0.69 1.0 3379 87298
Expression level of Genes
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miRNAs possibly regulated by vista39898[chr3:9452001-9452408]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results