EnhancerDB
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  3. vista39902[chr3:9904404-9904624]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39902[chr3:9904404-9904624]
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Tissue distribution of vista39902
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Transcription factor that possibly regulate vista39902[chr3:9904404-9904624]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 9904090 9904895 PHF8 UCSC Txn Factor no Conserved 108528137
chr3 9904151 9904978 POLR2A UCSC Txn Factor no Conserved 108528138
chr3 9904188 9904654 CTCF UCSC Txn Factor no Conserved 108528139
chr3 9904310 9904599 RAD21 UCSC Txn Factor no Conserved 108528140
chr3 9904312 9904568 CTCFL UCSC Txn Factor no Conserved 108528141
chr3 9904373 9904567 EGR1 UCSC Txn Factor no Conserved 108528142
chr3 9904405 9904410 SP1 TRANSFAC yes 356164
chr3 9904405 9904410 SP1 TRANSFAC yes 70934895
chr3 9904405 9904412 SP1 TRANSFAC yes 356165
chr3 9904405 9904412 SP1 TRANSFAC yes 70934896
chr3 9904421 9904432 GCM1 JASPAR yes 356166
chr3 9904421 9904432 GCM1 JASPAR yes 70934897
chr3 9904421 9904440 CTCF JASPAR yes 356167
chr3 9904421 9904440 CTCF JASPAR yes 70934898
chr3 9904434 9904445 NRF1 JASPAR yes 356168
chr3 9904434 9904445 NRF1 JASPAR yes 70934899
chr3 9904438 9904442 NFE TRANSFAC yes 356169
chr3 9904438 9904442 NFE TRANSFAC yes 70934900
chr3 9904442 9904454 GLI2 JASPAR yes 356170
chr3 9904442 9904454 GLI2 JASPAR yes 70934901
chr3 9904443 9904455 ZBTB7A JASPAR yes 356171
chr3 9904443 9904455 ZBTB7A JASPAR yes 70934902
chr3 9904450 9904462 NHLH1 JASPAR yes 356172
chr3 9904450 9904462 NHLH1 JASPAR yes 70934903
chr3 9904470 9904475 SP1 TRANSFAC yes 356173
chr3 9904470 9904475 SP1 TRANSFAC yes 70934904
chr3 9904478 9904497 REST JASPAR yes 356174
chr3 9904478 9904497 REST JASPAR yes 70934905
chr3 9904482 9904501 CTCF JASPAR yes 356175
chr3 9904482 9904501 CTCF JASPAR yes 70934906
chr3 9904483 9904496 TFAP2A JASPAR yes 356176
chr3 9904483 9904496 TFAP2B JASPAR yes 356177
chr3 9904483 9904496 TFAP2C JASPAR yes 356178
chr3 9904483 9904496 TFAP2A JASPAR yes 70934907
chr3 9904483 9904496 TFAP2B JASPAR yes 70934908
chr3 9904483 9904496 TFAP2C JASPAR yes 70934909
chr3 9904489 9904502 NR2F1 JASPAR yes 356179
chr3 9904489 9904502 NR2F1 JASPAR yes 70934910
chr3 9904492 9904512 ESR1 JASPAR yes 356180
chr3 9904492 9904512 ESR1 JASPAR yes 70934911
chr3 9904493 9904497 ESR1 TRANSFAC yes 356181
chr3 9904493 9904497 ESR1 TRANSFAC yes 70934912
chr3 9904513 9904523 NFKB1 JASPAR yes 356182
chr3 9904513 9904523 NFKB1 JASPAR yes 70934913
chr3 9904513 9904524 NFKB1 JASPAR yes 356183
chr3 9904513 9904524 NFKB1 JASPAR yes 70934914
chr3 9904522 9904526 NFE TRANSFAC yes 356184
chr3 9904522 9904526 NFE TRANSFAC yes 70934915
chr3 9904548 9904553 SP1 TRANSFAC yes 356185
chr3 9904548 9904553 SP1 TRANSFAC yes 70934916
chr3 9904551 9904556 SP1 TRANSFAC yes 356186
chr3 9904551 9904556 SP1 TRANSFAC yes 70934917
chr3 9904557 9904563 YY1 JASPAR yes 356187
chr3 9904557 9904563 YY1 JASPAR yes 70934918
chr3 9904560 9904571 HOXA10 JASPAR yes 356188
chr3 9904560 9904571 HOXA10 JASPAR yes 70934919
chr3 9904563 9904567 YY1 TRANSFAC yes 356189
chr3 9904563 9904567 YY1 TRANSFAC yes 70934920
chr3 9904570 9904579 SP1 TRANSFAC yes 356190
chr3 9904570 9904579 SP1 TRANSFAC yes 70934921
chr3 9904571 9904577 SP1 TRANSFAC yes 356191
chr3 9904571 9904577 SP1 TRANSFAC yes 70934922
chr3 9904571 9904581 SP1 JASPAR yes 356192
chr3 9904571 9904581 SP1 JASPAR yes 70934923
chr3 9904572 9904579 SP1 TRANSFAC yes 356193
chr3 9904572 9904579 SP1 TRANSFAC yes 70934924
chr3 9904573 9904578 SP1 TRANSFAC yes 356194
chr3 9904573 9904578 SP1 TRANSFAC yes 70934925
chr3 9904573 9904579 SP1 TRANSFAC yes 356195
chr3 9904573 9904579 SP1 TRANSFAC yes 70934926
chr3 9904573 9904580 SP1 TRANSFAC yes 356196
chr3 9904573 9904580 SP1 TRANSFAC yes 70934927
chr3 9904574 9904588 GLIS2 JASPAR yes 356197
chr3 9904574 9904588 ZIC1 JASPAR yes 356198
chr3 9904574 9904588 GLIS2 JASPAR yes 70934928
chr3 9904574 9904588 ZIC1 JASPAR yes 70934929
chr3 9904574 9904589 ZIC3 JASPAR yes 356199
chr3 9904574 9904589 ZIC4 JASPAR yes 356200
chr3 9904574 9904589 ZIC3 JASPAR yes 70934930
chr3 9904574 9904589 ZIC4 JASPAR yes 70934931
chr3 9904578 9904587 TFAP2A JASPAR yes 356201
chr3 9904578 9904587 TFAP2A JASPAR yes 70934932
chr3 9904601 9904611 SP1 JASPAR yes 356202
chr3 9904601 9904611 SP1 JASPAR yes 70934933
chr3 9904603 9904618 TFAP2A JASPAR yes 356203
chr3 9904603 9904618 TFAP2C JASPAR yes 356204
chr3 9904603 9904618 TFAP2A JASPAR yes 70934934
chr3 9904603 9904618 TFAP2C JASPAR yes 70934935
chr3 9904605 9904620 TFAP2C JASPAR yes 356205
chr3 9904605 9904620 TFAP2C JASPAR yes 70934936
chr3 9904606 9904618 TFAP2A JASPAR yes 356206
chr3 9904606 9904618 TFAP2B JASPAR yes 356207
chr3 9904606 9904618 TFAP2C JASPAR yes 356208
chr3 9904606 9904618 TFAP2A JASPAR yes 70934937
chr3 9904606 9904618 TFAP2B JASPAR yes 70934938
chr3 9904606 9904618 TFAP2C JASPAR yes 70934939
chr3 9904607 9904616 TFAP2A JASPAR yes 356209
chr3 9904607 9904616 TFAP2A JASPAR yes 70934940
SNP sites on vista39902[chr3:9904404-9904624]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 9904416 rs542771544 G A,C
CTCF CTCFL EGR1 PHF8 POLR2A RAD21
6540888
chr3 9904475 rs528666837 G A,C
CTCF CTCFL EGR1 PHF8 POLR2A RAD21 SP1
6540889
chr3 9904510 rs540388388 A G
CTCF CTCFL EGR1 ESR1 PHF8 POLR2A RAD21
6540890
chr3 9904557 rs147460040 C A
CTCF CTCFL EGR1 PHF8 POLR2A RAD21 YY1
6540891
chr3 9904605 rs547983886 C T
CTCF PHF8 POLR2A SP1 TFAP2A TFAP2C
6540892
Genes possibly regulated by vista39902[chr3:9904404-9904624]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 9799026 9811676 - CAMK1 ENSG00000134072.6 9811676 0.74 1.0 3385 7272
chr3 9821544 9834695 - TADA3 ENSG00000171148.9 9834695 0.54 1.0 3386 30291
chr3 9834179 9849410 + ARPC4 ENSG00000241553.8 9834179 0.71 0.98 3387 29775
chr3 9834766 9877085 + ARPC4-TTLL3 ENSG00000250151.5 9834766 0.84 0.81 3388 30362
chr3 9849770 9896822 + TTLL3 ENSG00000214021.11 9849770 0.78 1.0 3389 45366
chr3 9879533 9886286 - RPUSD3 ENSG00000156990.10 9886286 0.7 1.0 3390 81882
chr3 9908398 9921938 - CIDEC ENSG00000187288.6 9921938 1.0 0.92 3391 82686
chr3 9932238 9936033 + JAGN1 ENSG00000171135.10 9932238 0.45 0.99 3392 72386
chr3 9944296 9958086 + IL17RE ENSG00000163701.14 9944296 0.76 1.0 3393 60328
chr3 9958758 9975314 + IL17RC ENSG00000163702.14 9958758 0.61 1.0 3394 45866
chr3 9975506 9987097 + CRELD1 ENSG00000163703.13 9975506 0.75 1.0 3395 29118
chr3 9987226 9994078 - PRRT3 ENSG00000163704.7 9994078 0.75 0.99 3396 10546
Expression level of Genes
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miRNAs possibly regulated by vista39902[chr3:9904404-9904624]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results