EnhancerDB
  1. Home
  2. Enhancers
  3. vista39909[chr3:10228924-10229327]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39909[chr3:10228924-10229327]
Back to top
Tissue distribution of vista39909
Back to top
Transcription factor that possibly regulate vista39909[chr3:10228924-10229327]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 10228929 10228933 YY1 TRANSFAC yes 362032
chr3 10228929 10228933 YY1 TRANSFAC yes 70935279
chr3 10228937 10228953 E2F2 JASPAR yes 362033
chr3 10228937 10228953 E2F2 JASPAR yes 70935280
chr3 10228945 10228966 ZNF263 JASPAR yes 362034
chr3 10228945 10228966 ZNF263 JASPAR yes 70935281
chr3 10228953 10228958 GATA2 JASPAR yes 362035
chr3 10228953 10228958 GATA2 JASPAR yes 70935282
chr3 10228959 10228980 ZNF263 JASPAR yes 362036
chr3 10228959 10228980 ZNF263 JASPAR yes 70935283
chr3 10228963 10228981 IRF2 JASPAR yes 362037
chr3 10228963 10228981 IRF2 JASPAR yes 70935284
chr3 10228964 10228985 IRF1 JASPAR yes 362038
chr3 10228964 10228985 IRF1 JASPAR yes 70935285
chr3 10228966 10228981 PRDM1 JASPAR yes 362039
chr3 10228966 10228981 STAT2 JASPAR yes 362040
chr3 10228966 10228981 PRDM1 JASPAR yes 70935286
chr3 10228966 10228981 STAT2 JASPAR yes 70935287
chr3 10228967 10228981 STAT1 JASPAR yes 362041
chr3 10228967 10228981 STAT1 JASPAR yes 70935288
chr3 10228968 10228980 IRF1 JASPAR yes 362042
chr3 10228968 10228980 IRF1 JASPAR yes 70935289
chr3 10228968 10228983 IRF9 JASPAR yes 362043
chr3 10228968 10228983 IRF9 JASPAR yes 70935290
chr3 10229023 10229036 NR2F1 JASPAR yes 362044
chr3 10229023 10229036 NR2F1 JASPAR yes 70935291
chr3 10229026 10229034 NR4A2 JASPAR yes 362045
chr3 10229026 10229034 NR4A2 JASPAR yes 70935292
chr3 10229026 10229041 HNF4A JASPAR yes 362046
chr3 10229026 10229041 HNF4A JASPAR yes 70935293
chr3 10229027 10229041 NR2F1 JASPAR yes 362047
chr3 10229027 10229041 RXRG JASPAR yes 362048
chr3 10229027 10229041 NR2F1 JASPAR yes 70935294
chr3 10229027 10229041 RXRG JASPAR yes 70935295
chr3 10229027 10229042 HNF4G JASPAR yes 362049
chr3 10229027 10229042 NR2C2 JASPAR yes 362050
chr3 10229027 10229042 HNF4G JASPAR yes 70935296
chr3 10229027 10229042 NR2C2 JASPAR yes 70935297
chr3 10229038 10229049 STAT1 JASPAR yes 362051
chr3 10229038 10229049 STAT1 JASPAR yes 70935298
chr3 10229079 10229085 ESR1 TRANSFAC yes 362052
chr3 10229079 10229085 ESR1 TRANSFAC yes 70935299
chr3 10229081 10229085 ESR1 TRANSFAC yes 362053
chr3 10229081 10229085 ESR1 TRANSFAC yes 70935300
chr3 10229087 10229097 GABPA JASPAR yes 362054
chr3 10229087 10229097 GABPA JASPAR yes 70935301
chr3 10229087 10229098 FLI1 JASPAR yes 362055
chr3 10229087 10229098 FLI1 JASPAR yes 70935302
chr3 10229088 10229096 EHF JASPAR yes 362056
chr3 10229088 10229096 EHF JASPAR yes 70935303
chr3 10229093 10229098 SP1 TRANSFAC yes 362057
chr3 10229093 10229098 SP1 TRANSFAC yes 70935304
chr3 10229099 10229115 SOX4 JASPAR yes 362058
chr3 10229099 10229115 SOX4 JASPAR yes 70935305
chr3 10229107 10229113 SOX10 JASPAR yes 362059
chr3 10229107 10229113 SOX10 JASPAR yes 70935306
chr3 10229115 10229125 ALX3 JASPAR yes 362060
chr3 10229115 10229125 ALX3 JASPAR yes 70935307
chr3 10229116 10229124 LHX9 JASPAR yes 362061
chr3 10229116 10229124 SHOX JASPAR yes 362062
chr3 10229116 10229124 LHX9 JASPAR yes 70935308
chr3 10229116 10229124 SHOX JASPAR yes 70935309
chr3 10229119 10229124 MYB TRANSFAC yes 362063
chr3 10229119 10229124 MYB TRANSFAC yes 70935310
chr3 10229163 10229167 LFA1 TRANSFAC yes 362064
chr3 10229163 10229167 LFA1 TRANSFAC yes 70935311
chr3 10229198 10229202 YY1 TRANSFAC yes 362065
chr3 10229198 10229202 YY1 TRANSFAC yes 70935312
chr3 10229208 10229219 USF2 JASPAR yes 362066
chr3 10229208 10229219 USF2 JASPAR yes 70935313
chr3 10229209 10229219 MAX JASPAR yes 362067
chr3 10229209 10229219 MAX JASPAR yes 70935314
chr3 10229228 10229232 H4TF2 TRANSFAC yes 362068
chr3 10229228 10229232 H4TF2 TRANSFAC yes 70935315
chr3 10229265 10229279 POU4F1 JASPAR yes 362069
chr3 10229265 10229279 POU4F1 JASPAR yes 70935316
chr3 10229270 10229273 MYB TRANSFAC yes 362070
chr3 10229270 10229273 MYB TRANSFAC yes 70935317
chr3 10229280 10229291 NFKB1 JASPAR yes 362071
chr3 10229280 10229291 NFKB1 JASPAR yes 70935318
chr3 10229281 10229291 NFKB1 JASPAR yes 362072
chr3 10229281 10229291 RELA JASPAR yes 362073
chr3 10229281 10229291 NFKB1 JASPAR yes 70935319
chr3 10229281 10229291 RELA JASPAR yes 70935320
chr3 10229281 10229292 NFKB1 JASPAR yes 362074
chr3 10229281 10229292 NFKB1 JASPAR yes 70935321
chr3 10229282 10229292 RELA JASPAR yes 362075
chr3 10229282 10229292 REL JASPAR yes 362076
chr3 10229282 10229292 RELA JASPAR yes 70935322
chr3 10229282 10229292 REL JASPAR yes 70935323
chr3 10229285 10229301 SOX8 JASPAR yes 362077
chr3 10229285 10229301 SOX8 JASPAR yes 70935324
chr3 10229319 10229335 POU4F2 JASPAR yes 362078
chr3 10229319 10229335 POU4F2 JASPAR yes 70935325
SNP sites on vista39909[chr3:10228924-10229327]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 10228944 rs563913827 A T
E2F2
6541891
chr3 10229065 rs138272144 T TGAAG no 6541892
chr3 10229097 rs116906153 C T
FLI1 GABPA SP1
6541893
chr3 10229141 rs75836810 A G no 6541894
chr3 10229160 rs115820364 C T no 6541895
chr3 10229189 rs17032518 T C no 6541896
chr3 10229241 rs11927577 T C no 6541897
chr3 10229281 rs559698774 C T
NFKB1 RELA
6541898
chr3 10229282 rs375460785 G A,C
NFKB1 REL RELA
6541899
chr3 10229284 rs73811844 G C
NFKB1 REL RELA
6541900
chr3 10229297 rs148706669 CT C
SOX8
6541901
chr3 10229297 rs779159263 CT C
SOX8
6541902
Genes possibly regulated by vista39909[chr3:10228924-10229327]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 10123001 10149915 - FANCD2OS ENSG00000163705.8 10149915 0.98 1.0 3399 20991
chr3 10157276 10168874 + BRK1 ENSG00000254999.2 10157276 0.52 0.99 3400 28352
chr3 10182692 10193904 + VHL ENSG00000134086.7 10182692 0.76 0.99 3401 53768
chr3 10206549 10285427 + IRAK2 ENSG00000134070.4 10206549 0.82 0.99 3402 77625
chr3 10289707 10322902 + TATDN2 ENSG00000157014.6 10289707 0.67 0.97 3403 39620
chr3 10291056 10327480 + RP11-438J1.1 ENSG00000272410.1 10291056 0.88 0.81 3404 38271
Expression level of Genes
Back to top
miRNAs possibly regulated by vista39909[chr3:10228924-10229327]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results