EnhancerDB
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  3. vista39923[chr3:10269999-10270176]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39923[chr3:10269999-10270176]
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Tissue distribution of vista39923
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Transcription factor that possibly regulate vista39923[chr3:10269999-10270176]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 10269975 10270259 RUNX3 UCSC Txn Factor no Conserved 108528182
chr3 10270007 10270025 TP53 JASPAR yes 366192
chr3 10270007 10270025 TP63 JASPAR yes 366193
chr3 10270007 10270025 TP73 JASPAR yes 366194
chr3 10270007 10270025 TP53 JASPAR yes 70936034
chr3 10270007 10270025 TP63 JASPAR yes 70936035
chr3 10270007 10270025 TP73 JASPAR yes 70936036
chr3 10270008 10270028 TP53 JASPAR yes 366195
chr3 10270008 10270028 TP53 JASPAR yes 70936037
chr3 10270009 10270022 ZBED1 JASPAR yes 366196
chr3 10270009 10270022 ZBED1 JASPAR yes 70936038
chr3 10270010 10270023 ZBED1 JASPAR yes 366197
chr3 10270010 10270023 ZBED1 JASPAR yes 70936039
chr3 10270013 10270031 NR3C1 JASPAR yes 366198
chr3 10270013 10270031 NR3C1 JASPAR yes 70936040
chr3 10270022 10270037 LEF1 JASPAR yes 366199
chr3 10270022 10270037 LEF1 JASPAR yes 70936041
chr3 10270023 10270028 ETS2 TRANSFAC yes 366200
chr3 10270023 10270028 ETS2 TRANSFAC yes 70936042
chr3 10270023 10270037 TCF7L2 JASPAR yes 366201
chr3 10270023 10270037 TCF7L2 JASPAR yes 70936043
chr3 10270025 10270032 TCF4 TRANSFAC yes 366202
chr3 10270025 10270032 TCF4 TRANSFAC yes 70936044
chr3 10270026 10270032 LEF1 TRANSFAC yes 366203
chr3 10270026 10270032 TCF4 TRANSFAC yes 366204
chr3 10270026 10270032 LEF1 TRANSFAC yes 70936045
chr3 10270026 10270032 TCF4 TRANSFAC yes 70936046
chr3 10270058 10270062 LFA1 TRANSFAC yes 366205
chr3 10270058 10270062 LFA1 TRANSFAC yes 70936047
chr3 10270068 10270080 BHLHE23 JASPAR yes 366206
chr3 10270068 10270080 BHLHE23 JASPAR yes 70936048
chr3 10270069 10270079 BHLHE22 JASPAR yes 366207
chr3 10270069 10270079 NEUROD2 JASPAR yes 366208
chr3 10270069 10270079 OLIG1 JASPAR yes 366209
chr3 10270069 10270079 OLIG2 JASPAR yes 366210
chr3 10270069 10270079 OLIG3 JASPAR yes 366211
chr3 10270069 10270079 BHLHE22 JASPAR yes 70936049
chr3 10270069 10270079 NEUROD2 JASPAR yes 70936050
chr3 10270069 10270079 OLIG1 JASPAR yes 70936051
chr3 10270069 10270079 OLIG2 JASPAR yes 70936052
chr3 10270069 10270079 OLIG3 JASPAR yes 70936053
chr3 10270086 10270105 REST JASPAR yes 366212
chr3 10270086 10270105 REST JASPAR yes 70936054
chr3 10270089 10270093 NFE TRANSFAC yes 366213
chr3 10270089 10270093 NFE TRANSFAC yes 70936055
chr3 10270092 10270101 THAP1 JASPAR yes 366214
chr3 10270092 10270101 THAP1 JASPAR yes 70936056
chr3 10270095 10270099 LFA1 TRANSFAC yes 366215
chr3 10270095 10270099 LFA1 TRANSFAC yes 70936057
chr3 10270109 10270129 RREB1 JASPAR yes 366216
chr3 10270109 10270129 RREB1 JASPAR yes 70936058
chr3 10270110 10270130 RREB1 JASPAR yes 366217
chr3 10270110 10270130 RREB1 JASPAR yes 70936059
chr3 10270120 10270132 INSM1 JASPAR yes 366218
chr3 10270120 10270132 INSM1 JASPAR yes 70936060
chr3 10270127 10270131 LFA1 TRANSFAC yes 366219
chr3 10270127 10270131 LFA1 TRANSFAC yes 70936061
chr3 10270149 10270153 YY1 TRANSFAC yes 366220
chr3 10270149 10270153 YY1 TRANSFAC yes 70936062
chr3 10270162 10270172 RELA JASPAR yes 366221
chr3 10270162 10270172 RELA JASPAR yes 70936063
chr3 10270162 10270173 NFKB1 JASPAR yes 366222
chr3 10270162 10270173 NFKB1 JASPAR yes 70936064
chr3 10270164 10270169 H4TF1 TRANSFAC yes 366223
chr3 10270164 10270169 H4TF1 TRANSFAC yes 70936065
chr3 10270164 10270179 STAT1 JASPAR yes 366224
chr3 10270164 10270179 STAT1 JASPAR yes 70936066
chr3 10270166 10270177 STAT1 JASPAR yes 366225
chr3 10270166 10270177 STAT3 JASPAR yes 366226
chr3 10270166 10270177 STAT1 JASPAR yes 70936067
chr3 10270166 10270177 STAT3 JASPAR yes 70936068
chr3 10270175 10270189 EBF1 JASPAR yes 366227
chr3 10270175 10270189 EBF1 JASPAR yes 70936069
SNP sites on vista39923[chr3:10269999-10270176]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 10270039 rs146693150 C T
RUNX3
6542342
chr3 10270050 rs140261387 A T
RUNX3
6542343
chr3 10270070 rs145247524 C G
BHLHE22 BHLHE23 NEUROD2 OLIG1 OLIG2 OLIG3 RUNX3
6542344
Genes possibly regulated by vista39923[chr3:10269999-10270176]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 10182692 10193904 + VHL ENSG00000134086.7 10182692 0.76 0.99 3401 12693
chr3 10206549 10285427 + IRAK2 ENSG00000134070.4 10206549 0.82 0.99 3402 36550
chr3 10289707 10322902 + TATDN2 ENSG00000157014.6 10289707 0.67 0.97 3403 80469
chr3 10291056 10327480 + RP11-438J1.1 ENSG00000272410.1 10291056 0.88 0.81 3404 79120
chr3 10327359 10334631 - GHRL ENSG00000157017.11 10334631 0.98 0.99 3405 35545
chr3 10334815 10362862 - SEC13 ENSG00000157020.13 10362862 0.62 0.99 3406 7314
Expression level of Genes
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miRNAs possibly regulated by vista39923[chr3:10269999-10270176]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results