EnhancerDB
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  3. vista39925[chr3:10273840-10274164]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39925[chr3:10273840-10274164]
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Tissue distribution of vista39925
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Transcription factor that possibly regulate vista39925[chr3:10273840-10274164]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 10273816 10274089 ATF2 UCSC Txn Factor no Conserved 108528185
chr3 10273832 10274097 RUNX3 UCSC Txn Factor no Conserved 108528186
chr3 10273849 10273865 ZNF143 JASPAR yes 70936102
chr3 10273860 10273873 POU2F2 JASPAR yes 70936103
chr3 10273863 10273875 IRF1 JASPAR yes 70936104
chr3 10273863 10273877 IRF7 JASPAR yes 70936105
chr3 10273868 10273872 YY1 TRANSFAC yes 70936106
chr3 10273885 10273898 POU2F2 JASPAR yes 70936107
chr3 10273888 10273897 POU3F4 JASPAR yes 70936108
chr3 10273888 10273897 POU5F1B JASPAR yes 70936109
chr3 10273894 10273908 RORA JASPAR yes 70936110
chr3 10273897 10273907 RORA JASPAR yes 70936111
chr3 10273899 10273919 PPARG JASPAR yes 70936112
chr3 10273902 10273906 ESR1 TRANSFAC yes 70936113
chr3 10273905 10273909 YY1 TRANSFAC yes 70936114
chr3 10273926 10273930 NFE TRANSFAC yes 70936115
chr3 10273946 10273956 POU6F2 JASPAR yes 70936116
chr3 10273950 10273954 YY1 TRANSFAC yes 70936117
chr3 10273952 10273963 FLI1 JASPAR yes 70936118
chr3 10273953 10273963 ERF JASPAR yes 70936119
chr3 10273953 10273963 ETS1 JASPAR yes 70936120
chr3 10273964 10273985 ZNF263 JASPAR yes 70936121
chr3 10273993 10273997 YY1 TRANSFAC yes 70936122
chr3 10273994 10274002 FEV JASPAR yes 70936123
chr3 10273994 10274012 SRF JASPAR yes 70936124
chr3 10273996 10274011 MEF2A JASPAR yes 70936125
chr3 10273996 10274012 SRF JASPAR yes 70936126
chr3 10273996 10274014 SRF JASPAR yes 70936127
chr3 10273997 10274012 MEF2C JASPAR yes 70936128
chr3 10273998 10274010 MEF2B JASPAR yes 70936129
chr3 10273999 10274009 MEF2A JASPAR yes 70936130
chr3 10274002 10274006 YY1 TRANSFAC yes 70936131
chr3 10274005 10274011 NFIC JASPAR yes 70936132
chr3 10274014 10274024 NKX2-3 JASPAR yes 70936133
chr3 10274027 10274035 FOXO3 JASPAR yes 70936134
chr3 10274040 10274044 ESR1 TRANSFAC yes 70936135
chr3 10274049 10274055 SOX10 JASPAR yes 70936136
chr3 10274060 10274071 ELK4 JASPAR yes 70936137
chr3 10274060 10274071 FLI1 JASPAR yes 70936138
chr3 10274060 10274073 ELF3 JASPAR yes 70936139
chr3 10274061 10274071 ETV6 JASPAR yes 70936140
chr3 10274061 10274071 GABPA JASPAR yes 70936141
chr3 10274061 10274072 ELF5 JASPAR yes 70936142
chr3 10274061 10274073 EHF JASPAR yes 70936143
chr3 10274061 10274073 ELF1 JASPAR yes 70936144
chr3 10274061 10274073 ELF4 JASPAR yes 70936145
chr3 10274061 10274074 ELF1 JASPAR yes 70936146
chr3 10274061 10274076 STAT1 JASPAR yes 70936147
chr3 10274062 10274069 SPI1 JASPAR yes 70936148
chr3 10274062 10274070 EHF JASPAR yes 70936149
chr3 10274062 10274070 FEV JASPAR yes 70936150
chr3 10274117 10274131 RORA JASPAR yes 70936151
chr3 10274122 10274132 MEF2A JASPAR yes 70936152
SNP sites on vista39925[chr3:10273840-10274164]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 10273896 rs542144466 T C
ATF2 POU2F2 POU3F4 POU5F1B RORA RUNX3
6542373
chr3 10273904 rs185149328 G T
ATF2 ESR1 PPARG RORA RUNX3
6542374
chr3 10273923 rs527468970 C T
ATF2 RUNX3
6542375
chr3 10274003 rs9870172 T C
ATF2 MEF2A MEF2B MEF2C RUNX3 SRF YY1
6542376
chr3 10274104 rs190391731 C T no 6542377
Genes possibly regulated by vista39925[chr3:10273840-10274164]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 10182692 10193904 + VHL ENSG00000134086.7 10182692 0.76 0.99 3401 8852
chr3 10206549 10285427 + IRAK2 ENSG00000134070.4 10206549 0.82 0.99 3402 32709
chr3 10289707 10322902 + TATDN2 ENSG00000157014.6 10289707 0.67 0.97 3403 84457
chr3 10291056 10327480 + RP11-438J1.1 ENSG00000272410.1 10291056 0.88 0.81 3404 83108
chr3 10327359 10334631 - GHRL ENSG00000157017.11 10334631 0.98 0.99 3405 39533
chr3 10334815 10362862 - SEC13 ENSG00000157020.13 10362862 0.62 0.99 3406 11302
Expression level of Genes
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miRNAs possibly regulated by vista39925[chr3:10273840-10274164]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results