EnhancerDB
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  3. vista39981[chr3:12275748-12276053]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39981[chr3:12275748-12276053]
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Tissue distribution of vista39981
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Transcription factor that possibly regulate vista39981[chr3:12275748-12276053]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12275746 12275767 ZNF263 JASPAR yes 465863
chr3 12275746 12275767 ZNF263 JASPAR yes 70938219
chr3 12275750 12275771 ZNF263 JASPAR yes 465864
chr3 12275750 12275771 ZNF263 JASPAR yes 70938220
chr3 12275753 12275774 ZNF263 JASPAR yes 465865
chr3 12275753 12275774 ZNF263 JASPAR yes 70938221
chr3 12275754 12275765 E2F6 JASPAR yes 465866
chr3 12275754 12275765 E2F6 JASPAR yes 70938222
chr3 12275754 12275775 ZNF263 JASPAR yes 465867
chr3 12275754 12275775 ZNF263 JASPAR yes 70938223
chr3 12275758 12275769 E2F6 JASPAR yes 465868
chr3 12275758 12275769 E2F6 JASPAR yes 70938224
chr3 12275778 12275788 SP1 JASPAR yes 465869
chr3 12275778 12275788 SP1 JASPAR yes 70938225
chr3 12275790 12275810 RREB1 JASPAR yes 465870
chr3 12275790 12275810 RREB1 JASPAR yes 70938226
chr3 12275791 12275801 SREBF1 JASPAR yes 465871
chr3 12275791 12275801 SREBF2 JASPAR yes 465872
chr3 12275791 12275801 SREBF1 JASPAR yes 70938227
chr3 12275791 12275801 SREBF2 JASPAR yes 70938228
chr3 12275815 12275833 NFYA JASPAR yes 465873
chr3 12275815 12275833 NFYA JASPAR yes 70938229
chr3 12275818 12275834 NFYA JASPAR yes 465874
chr3 12275818 12275834 NFYA JASPAR yes 70938230
chr3 12275820 12275830 EN2 JASPAR yes 465875
chr3 12275820 12275830 ESX1 JASPAR yes 465876
chr3 12275820 12275830 GBX1 JASPAR yes 465877
chr3 12275820 12275830 GBX2 JASPAR yes 465878
chr3 12275820 12275830 GSX2 JASPAR yes 465879
chr3 12275820 12275830 HESX1 JASPAR yes 465880
chr3 12275820 12275830 LBX2 JASPAR yes 465881
chr3 12275820 12275830 LHX2 JASPAR yes 465882
chr3 12275820 12275830 MIXL1 JASPAR yes 465883
chr3 12275820 12275830 RAX JASPAR yes 465884
chr3 12275820 12275830 EN2 JASPAR yes 70938231
chr3 12275820 12275830 ESX1 JASPAR yes 70938232
chr3 12275820 12275830 GBX1 JASPAR yes 70938233
chr3 12275820 12275830 GBX2 JASPAR yes 70938234
chr3 12275820 12275830 GSX2 JASPAR yes 70938235
chr3 12275820 12275830 HESX1 JASPAR yes 70938236
chr3 12275820 12275830 LBX2 JASPAR yes 70938237
chr3 12275820 12275830 LHX2 JASPAR yes 70938238
chr3 12275820 12275830 MIXL1 JASPAR yes 70938239
chr3 12275820 12275830 RAX JASPAR yes 70938240
chr3 12275821 12275829 BARX1 JASPAR yes 465885
chr3 12275821 12275829 BSX JASPAR yes 465886
chr3 12275821 12275829 EN1 JASPAR yes 465887
chr3 12275821 12275829 ISX JASPAR yes 465888
chr3 12275821 12275829 LHX9 JASPAR yes 465889
chr3 12275821 12275829 MSX1 JASPAR yes 465890
chr3 12275821 12275829 MSX2 JASPAR yes 465891
chr3 12275821 12275829 PRRX1 JASPAR yes 465892
chr3 12275821 12275829 RAX2 JASPAR yes 465893
chr3 12275821 12275829 SHOX JASPAR yes 465894
chr3 12275821 12275829 BARX1 JASPAR yes 70938241
chr3 12275821 12275829 BSX JASPAR yes 70938242
chr3 12275821 12275829 EN1 JASPAR yes 70938243
chr3 12275821 12275829 ISX JASPAR yes 70938244
chr3 12275821 12275829 LHX9 JASPAR yes 70938245
chr3 12275821 12275829 MSX1 JASPAR yes 70938246
chr3 12275821 12275829 MSX2 JASPAR yes 70938247
chr3 12275821 12275829 PRRX1 JASPAR yes 70938248
chr3 12275821 12275829 RAX2 JASPAR yes 70938249
chr3 12275821 12275829 SHOX JASPAR yes 70938250
chr3 12275841 12275845 ESR1 TRANSFAC yes 465895
chr3 12275841 12275845 ESR1 TRANSFAC yes 70938251
chr3 12275845 12275860 MEF2C JASPAR yes 465896
chr3 12275845 12275860 MEF2C JASPAR yes 70938252
chr3 12275846 12275861 MEF2A JASPAR yes 465897
chr3 12275846 12275861 MEF2A JASPAR yes 70938253
chr3 12275847 12275859 MEF2A JASPAR yes 465898
chr3 12275847 12275859 MEF2B JASPAR yes 465899
chr3 12275847 12275859 MEF2D JASPAR yes 465900
chr3 12275847 12275859 MEF2A JASPAR yes 70938254
chr3 12275847 12275859 MEF2B JASPAR yes 70938255
chr3 12275847 12275859 MEF2D JASPAR yes 70938256
chr3 12275848 12275858 MEF2A JASPAR yes 465901
chr3 12275848 12275858 MEF2A JASPAR yes 70938257
chr3 12275852 12275863 PROP1 JASPAR yes 465902
chr3 12275852 12275863 PROP1 JASPAR yes 70938258
chr3 12275869 12275875 HiNF-A TRANSFAC yes 465903
chr3 12275869 12275875 HiNF-A TRANSFAC yes 70938259
chr3 12275888 12275898 NFATC3 JASPAR yes 465904
chr3 12275888 12275898 NFATC3 JASPAR yes 70938260
chr3 12275892 12275910 MAFF JASPAR yes 465905
chr3 12275892 12275910 MAFF JASPAR yes 70938261
chr3 12275894 12275909 MAFK JASPAR yes 465906
chr3 12275894 12275909 MAFK JASPAR yes 70938262
chr3 12275899 12275910 NFE2 JASPAR yes 465907
chr3 12275899 12275910 NFE2 JASPAR yes 70938263
chr3 12275900 12275909 JDP2 JASPAR yes 465908
chr3 12275900 12275909 JDP2 JASPAR yes 70938264
chr3 12275904 12275917 POU2F2 JASPAR yes 465909
chr3 12275904 12275917 POU2F2 JASPAR yes 70938265
chr3 12275906 12275910 YY1 TRANSFAC yes 465910
chr3 12275906 12275910 YY1 TRANSFAC yes 70938266
chr3 12275930 12275945 FOXA1 JASPAR yes 465911
chr3 12275930 12275945 FOXA1 JASPAR yes 70938267
chr3 12275932 12275945 POU2F2 JASPAR yes 465912
chr3 12275932 12275945 POU2F2 JASPAR yes 70938268
chr3 12275934 12275938 YY1 TRANSFAC yes 465913
chr3 12275934 12275938 YY1 TRANSFAC yes 70938269
chr3 12275934 12275945 FOXA1 JASPAR yes 465914
chr3 12275934 12275945 FOXA1 JASPAR yes 70938270
chr3 12275934 12275946 POU2F1 JASPAR yes 465915
chr3 12275934 12275946 POU2F1 JASPAR yes 70938271
chr3 12275935 12275942 POU2F1 TRANSFAC yes 465916
chr3 12275935 12275942 POU2F2C TRANSFAC yes 465917
chr3 12275935 12275942 POU2F2 TRANSFAC yes 465918
chr3 12275935 12275942 POU2F1 TRANSFAC yes 70938272
chr3 12275935 12275942 POU2F2C TRANSFAC yes 70938273
chr3 12275935 12275942 POU2F2 TRANSFAC yes 70938274
chr3 12275935 12275943 POU2F1 TRANSFAC yes 465919
chr3 12275935 12275943 POU2F1 TRANSFAC yes 70938275
chr3 12275935 12275944 POU3F4 JASPAR yes 465920
chr3 12275935 12275944 POU5F1B JASPAR yes 465921
chr3 12275935 12275944 POU3F4 JASPAR yes 70938276
chr3 12275935 12275944 POU5F1B JASPAR yes 70938277
chr3 12275959 12275970 USF2 JASPAR yes 465922
chr3 12275959 12275970 USF2 JASPAR yes 70938278
chr3 12275960 12275970 TFE3 JASPAR yes 465923
chr3 12275960 12275970 TFEB JASPAR yes 465924
chr3 12275960 12275970 TFEC JASPAR yes 465925
chr3 12275960 12275970 TFE3 JASPAR yes 70938279
chr3 12275960 12275970 TFEB JASPAR yes 70938280
chr3 12275960 12275970 TFEC JASPAR yes 70938281
chr3 12275960 12275971 USF1 JASPAR yes 465926
chr3 12275960 12275971 USF1 JASPAR yes 70938282
chr3 12275994 12276000 YY1 JASPAR yes 465927
chr3 12275994 12276000 YY1 JASPAR yes 70938283
chr3 12276002 12276007 SP1 TRANSFAC yes 465928
chr3 12276002 12276007 SP1 TRANSFAC yes 70938284
chr3 12276003 12276008 SP1 TRANSFAC yes 465929
chr3 12276003 12276008 SP1 TRANSFAC yes 70938285
chr3 12276049 12276057 FOXC1 JASPAR yes 465930
chr3 12276049 12276057 FOXC1 JASPAR yes 70938286
SNP sites on vista39981[chr3:12275748-12276053]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12275882 rs113846550 G A no 6553263
chr3 12275914 rs144468273 A G
POU2F2
6553264
chr3 12275946 rs527319234 T TGATAC
POU2F1
6553265
chr3 12275948 rs531223513 G A no 6553266
chr3 12275950 rs536166353 G GCAT no 6553267
chr3 12275951 rs549318918 G T no 6553268
chr3 12275952 rs568725036 G A no 6553269
Genes possibly regulated by vista39981[chr3:12275748-12276053]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12194551 12200851 - TIMP4 ENSG00000157150.4 12200851 0.96 0.95 3414 25103
chr3 12328867 12475855 + PPARG ENSG00000132170.15 12328867 0.9 1.0 3415 47186
Expression level of Genes
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miRNAs possibly regulated by vista39981[chr3:12275748-12276053]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results