EnhancerDB
  1. Home
  2. Enhancers
  3. vista39990[chr3:12555203-12555562]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39990[chr3:12555203-12555562]
Back to top
Tissue distribution of vista39990
Back to top
Transcription factor that possibly regulate vista39990[chr3:12555203-12555562]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12555205 12555223 NR3C1 JASPAR yes 70938764
chr3 12555211 12555219 GATA3 JASPAR yes 70938765
chr3 12555217 12555227 NFATC3 JASPAR yes 70938766
chr3 12555218 12555225 NFATC2 JASPAR yes 70938767
chr3 12555222 12555231 SOX9 JASPAR yes 70938768
chr3 12555272 12555288 POU4F2 JASPAR yes 70938769
chr3 12555285 12555306 ZNF263 JASPAR yes 70938770
chr3 12555288 12555309 IRF1 JASPAR yes 70938771
chr3 12555289 12555299 NFATC3 JASPAR yes 70938772
chr3 12555292 12555307 PRDM1 JASPAR yes 70938773
chr3 12555299 12555309 RORA JASPAR yes 70938774
chr3 12555300 12555313 NR2F1 JASPAR yes 70938775
chr3 12555302 12555310 NR4A2 JASPAR yes 70938776
chr3 12555302 12555319 ESR1 JASPAR yes 70938777
chr3 12555304 12555308 ESR1 TRANSFAC yes 70938778
chr3 12555326 12555336 NFIA JASPAR yes 70938779
chr3 12555328 12555334 NFIC JASPAR yes 70938780
chr3 12555336 12555344 MEIS2 JASPAR yes 70938781
chr3 12555336 12555344 MEIS3 JASPAR yes 70938782
chr3 12555337 12555341 NFE TRANSFAC yes 70938783
chr3 12555337 12555344 MEIS1 JASPAR yes 70938784
chr3 12555340 12555352 TAL1 JASPAR yes 70938785
chr3 12555341 12555354 ZBTB18 JASPAR yes 70938786
chr3 12555342 12555352 FIGLA JASPAR yes 70938787
chr3 12555342 12555352 MSC JASPAR yes 70938788
chr3 12555342 12555352 MYF6 JASPAR yes 70938789
chr3 12555342 12555352 NHLH1 JASPAR yes 70938790
chr3 12555342 12555352 TFAP4 JASPAR yes 70938791
chr3 12555354 12555360 HiNF-A TRANSFAC yes 70938792
chr3 12555359 12555376 NR3C1 JASPAR yes 70938793
chr3 12555359 12555376 NR3C2 JASPAR yes 70938794
chr3 12555384 12555402 MAFF JASPAR yes 70938795
chr3 12555386 12555401 MAFK JASPAR yes 70938796
chr3 12555399 12555414 HNF4A JASPAR yes 70938797
chr3 12555436 12555441 SP1 TRANSFAC yes 70938798
chr3 12555446 12555457 ESRRA JASPAR yes 70938799
chr3 12555450 12555454 LFA1 TRANSFAC yes 70938800
chr3 12555459 12555464 TFAP2A TRANSFAC yes 70938801
chr3 12555459 12555465 MZF1 JASPAR yes 70938802
chr3 12555466 12555470 NFE TRANSFAC yes 70938803
chr3 12555493 12555498 MYB TRANSFAC yes 70938804
chr3 12555504 12555514 CLOCK JASPAR yes 70938805
chr3 12555505 12555515 MAX JASPAR yes 70938806
chr3 12555515 12555529 GLIS2 JASPAR yes 70938807
chr3 12555515 12555529 GLIS3 JASPAR yes 70938808
chr3 12555544 12555559 AR JASPAR yes 70938809
chr3 12555544 12555559 STAT2 JASPAR yes 70938810
chr3 12555545 12555559 STAT1 JASPAR yes 70938811
SNP sites on vista39990[chr3:12555203-12555562]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12555305 rs57581024 G A
ESR1 IRF1 NR2F1 NR4A2 PRDM1 RORA ZNF263
6555215
chr3 12555366 rs79517286 G A
NR3C1 NR3C2
6555216
chr3 12555428 rs61686776 C T no 6555217
chr3 12555493 rs116103198 C T
MYB
6555218
chr3 12555524 rs59007738 T C
GLIS2 GLIS3
6555219
chr3 12555544 rs113589021 G A
AR STAT2
6555220
Genes possibly regulated by vista39990[chr3:12555203-12555562]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12525931 12581122 + TSEN2 ENSG00000154743.13 12525931 0.7 0.99 3416 70728
chr3 12556433 12602558 - C3orf83 ENSG00000225526.4 12602558 0.88 1.0 3417 53004
chr3 12598513 12625212 + MKRN2 ENSG00000075975.11 12598513 0.54 0.99 3418 57049
Expression level of Genes
Back to top
miRNAs possibly regulated by vista39990[chr3:12555203-12555562]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results