EnhancerDB
  1. Home
  2. Enhancers
  3. vista39997[chr3:12910559-12910807]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39997[chr3:12910559-12910807]
Back to top
Tissue distribution of vista39997
Back to top
Transcription factor that possibly regulate vista39997[chr3:12910559-12910807]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12910548 12910560 ZBTB7C JASPAR yes 508465
chr3 12910548 12910560 ZBTB7C JASPAR yes 70939096
chr3 12910562 12910567 SP1 TRANSFAC yes 508466
chr3 12910562 12910567 SP1 TRANSFAC yes 70939097
chr3 12910584 12910593 TFAP2A JASPAR yes 508467
chr3 12910584 12910593 TFAP2A JASPAR yes 70939098
chr3 12910591 12910595 H4TF2 TRANSFAC yes 508468
chr3 12910591 12910595 H4TF2 TRANSFAC yes 70939099
chr3 12910599 12910608 SP1 TRANSFAC yes 508469
chr3 12910599 12910608 SP1 TRANSFAC yes 70939100
chr3 12910600 12910608 SP1 TRANSFAC yes 508470
chr3 12910600 12910608 SP1 TRANSFAC yes 70939101
chr3 12910600 12910610 SP1 JASPAR yes 508471
chr3 12910600 12910610 SP1 JASPAR yes 70939102
chr3 12910634 12910644 SP1 JASPAR yes 508472
chr3 12910634 12910644 SP1 JASPAR yes 70939103
chr3 12910635 12910644 SP1 TRANSFAC yes 508473
chr3 12910635 12910644 SP1 TRANSFAC yes 70939104
chr3 12910636 12910641 SP1 TRANSFAC yes 508474
chr3 12910636 12910641 SP1 TRANSFAC yes 70939105
chr3 12910637 12910642 SP1 TRANSFAC yes 508475
chr3 12910637 12910642 SP1 TRANSFAC yes 70939106
chr3 12910637 12910643 SP1 TRANSFAC yes 508476
chr3 12910637 12910643 SP1 TRANSFAC yes 70939107
chr3 12910646 12910652 YY1 JASPAR yes 508477
chr3 12910646 12910652 YY1 JASPAR yes 70939108
chr3 12910660 12910669 SP1 TRANSFAC yes 508478
chr3 12910660 12910669 SP1 TRANSFAC yes 70939109
chr3 12910661 12910667 SP1 TRANSFAC yes 508479
chr3 12910661 12910667 SP1 TRANSFAC yes 70939110
chr3 12910661 12910671 SP1 JASPAR yes 508480
chr3 12910661 12910671 SP1 JASPAR yes 70939111
chr3 12910662 12910669 SP1 TRANSFAC yes 508481
chr3 12910662 12910669 SP1 TRANSFAC yes 70939112
chr3 12910663 12910668 SP1 TRANSFAC yes 508482
chr3 12910663 12910668 SP1 TRANSFAC yes 70939113
chr3 12910663 12910669 SP1 TRANSFAC yes 508483
chr3 12910663 12910669 SP1 TRANSFAC yes 70939114
chr3 12910663 12910670 SP1 TRANSFAC yes 508484
chr3 12910663 12910670 SP1 TRANSFAC yes 70939115
chr3 12910664 12910678 ZIC1 JASPAR yes 508485
chr3 12910664 12910678 ZIC1 JASPAR yes 70939116
chr3 12910664 12910679 ZIC3 JASPAR yes 508486
chr3 12910664 12910679 ZIC4 JASPAR yes 508487
chr3 12910664 12910679 ZIC3 JASPAR yes 70939117
chr3 12910664 12910679 ZIC4 JASPAR yes 70939118
chr3 12910668 12910674 SP1 TRANSFAC yes 508488
chr3 12910668 12910674 SP1 TRANSFAC yes 70939119
chr3 12910690 12910699 SP1 TRANSFAC yes 508489
chr3 12910690 12910699 SP1 TRANSFAC yes 70939120
chr3 12910691 12910697 SP1 TRANSFAC yes 508490
chr3 12910691 12910697 SP1 TRANSFAC yes 70939121
chr3 12910691 12910701 SP1 JASPAR yes 508491
chr3 12910691 12910701 SP1 JASPAR yes 70939122
chr3 12910692 12910699 SP1 TRANSFAC yes 508492
chr3 12910692 12910699 SP1 TRANSFAC yes 70939123
chr3 12910693 12910698 SP1 TRANSFAC yes 508493
chr3 12910693 12910698 SP1 TRANSFAC yes 70939124
chr3 12910693 12910699 SP1 TRANSFAC yes 508494
chr3 12910693 12910699 SP1 TRANSFAC yes 70939125
chr3 12910693 12910700 SP1 TRANSFAC yes 508495
chr3 12910693 12910700 SP1 TRANSFAC yes 70939126
chr3 12910696 12910715 RFX2 JASPAR yes 508496
chr3 12910696 12910715 RFX2 JASPAR yes 70939127
chr3 12910697 12910707 SP1 JASPAR yes 508497
chr3 12910697 12910707 SP1 JASPAR yes 70939128
chr3 12910700 12910716 RFX2 JASPAR yes 508498
chr3 12910700 12910716 RFX3 JASPAR yes 508499
chr3 12910700 12910716 RFX4 JASPAR yes 508500
chr3 12910700 12910716 RFX5 JASPAR yes 508501
chr3 12910700 12910716 RFX2 JASPAR yes 70939129
chr3 12910700 12910716 RFX3 JASPAR yes 70939130
chr3 12910700 12910716 RFX4 JASPAR yes 70939131
chr3 12910700 12910716 RFX5 JASPAR yes 70939132
chr3 12910701 12910720 RFX2 JASPAR yes 508502
chr3 12910701 12910720 RFX2 JASPAR yes 70939133
chr3 12910726 12910738 PKNOX1 JASPAR yes 508503
chr3 12910726 12910738 PKNOX2 JASPAR yes 508504
chr3 12910726 12910738 TGIF1 JASPAR yes 508505
chr3 12910726 12910738 TGIF2 JASPAR yes 508506
chr3 12910726 12910738 PKNOX1 JASPAR yes 70939134
chr3 12910726 12910738 PKNOX2 JASPAR yes 70939135
chr3 12910726 12910738 TGIF1 JASPAR yes 70939136
chr3 12910726 12910738 TGIF2 JASPAR yes 70939137
chr3 12910726 12910741 SCRT1 JASPAR yes 508507
chr3 12910726 12910741 SCRT1 JASPAR yes 70939138
chr3 12910727 12910737 FIGLA JASPAR yes 508508
chr3 12910727 12910737 ID4 JASPAR yes 508509
chr3 12910727 12910737 MSC JASPAR yes 508510
chr3 12910727 12910737 MYF6 JASPAR yes 508511
chr3 12910727 12910737 TCF3 JASPAR yes 508512
chr3 12910727 12910737 TCF4 JASPAR yes 508513
chr3 12910727 12910737 FIGLA JASPAR yes 70939139
chr3 12910727 12910737 ID4 JASPAR yes 70939140
chr3 12910727 12910737 MSC JASPAR yes 70939141
chr3 12910727 12910737 MYF6 JASPAR yes 70939142
chr3 12910727 12910737 TCF3 JASPAR yes 70939143
chr3 12910727 12910737 TCF4 JASPAR yes 70939144
chr3 12910728 12910737 SNAI2 JASPAR yes 508514
chr3 12910728 12910737 SNAI2 JASPAR yes 70939145
chr3 12910729 12910734 USF2 TRANSFAC yes 508515
chr3 12910729 12910734 USF2 TRANSFAC yes 70939146
chr3 12910730 12910736 PTF TRANSFAC yes 508516
chr3 12910730 12910736 PTF TRANSFAC yes 70939147
chr3 12910748 12910763 TFAP2A JASPAR yes 508517
chr3 12910748 12910763 TFAP2A JASPAR yes 70939148
chr3 12910750 12910765 TFAP2C JASPAR yes 508518
chr3 12910750 12910765 TFAP2C JASPAR yes 70939149
chr3 12910751 12910763 INSM1 JASPAR yes 508519
chr3 12910751 12910763 TFAP2A JASPAR yes 508520
chr3 12910751 12910763 TFAP2B JASPAR yes 508521
chr3 12910751 12910763 TFAP2C JASPAR yes 508522
chr3 12910751 12910763 INSM1 JASPAR yes 70939150
chr3 12910751 12910763 TFAP2A JASPAR yes 70939151
chr3 12910751 12910763 TFAP2B JASPAR yes 70939152
chr3 12910751 12910763 TFAP2C JASPAR yes 70939153
chr3 12910752 12910761 TFAP2A JASPAR yes 508523
chr3 12910752 12910761 TFAP2A JASPAR yes 70939154
chr3 12910764 12910779 AR JASPAR yes 508524
chr3 12910764 12910779 AR JASPAR yes 70939155
chr3 12910771 12910775 NFE TRANSFAC yes 508525
chr3 12910771 12910775 NFE TRANSFAC yes 70939156
chr3 12910800 12910804 NFE TRANSFAC yes 508526
chr3 12910800 12910804 NFE TRANSFAC yes 70939157
SNP sites on vista39997[chr3:12910559-12910807]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12910569 rs540293147 T C no 6557673
chr3 12910671 rs560308827 C G
SP1 ZIC1 ZIC3 ZIC4
6557674
chr3 12910697 rs532310328 C T
RFX2 SP1
6557675
chr3 12910717 rs544014634 CTA C
RFX2
6557676
chr3 12910780 rs545712581 C T no 6557677
chr3 12910781 rs565418359 GA G no 6557678
chr3 12910783 rs562799704 C G no 6557679
chr3 12910785 rs532648871 C CAAG no 6557680
chr3 12910787 rs531462211 A G no 6557681
Genes possibly regulated by vista39997[chr3:12910559-12910807]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12775024 12810956 - TMEM40 ENSG00000088726.11 12810956 0.99 1.0 3420 397
chr3 12837971 12913415 + CAND2 ENSG00000144712.7 12837971 0.81 0.93 3421 27412
chr3 12875984 12883087 - RPL32 ENSG00000144713.8 12883087 0.74 1.0 3422 72528
Expression level of Genes
Back to top
miRNAs possibly regulated by vista39997[chr3:12910559-12910807]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results