EnhancerDB
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  3. vista39998[chr3:12912593-12912771]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39998[chr3:12912593-12912771]
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Tissue distribution of vista39998
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Transcription factor that possibly regulate vista39998[chr3:12912593-12912771]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12912590 12912604 TLX1 JASPAR yes 508797
chr3 12912590 12912604 TLX1 JASPAR yes 70939158
chr3 12912601 12912612 FLI1 JASPAR yes 508798
chr3 12912601 12912612 FLI1 JASPAR yes 70939159
chr3 12912617 12912621 LFA1 TRANSFAC yes 508799
chr3 12912617 12912621 LFA1 TRANSFAC yes 70939160
chr3 12912630 12912644 ATF7 JASPAR yes 508800
chr3 12912630 12912644 BATF3 JASPAR yes 508801
chr3 12912630 12912644 CREB3 JASPAR yes 508802
chr3 12912630 12912644 ATF7 JASPAR yes 70939161
chr3 12912630 12912644 BATF3 JASPAR yes 70939162
chr3 12912630 12912644 CREB3 JASPAR yes 70939163
chr3 12912631 12912643 JDP2 JASPAR yes 508803
chr3 12912631 12912643 JDP2 JASPAR yes 70939164
chr3 12912631 12912644 ATF4 JASPAR yes 508804
chr3 12912631 12912644 ATF4 JASPAR yes 70939165
chr3 12912632 12912645 JUN JASPAR yes 508805
chr3 12912632 12912645 JUN JASPAR yes 70939166
chr3 12912633 12912638 ATF1 TRANSFAC yes 508806
chr3 12912633 12912638 ATF1 TRANSFAC yes 70939167
chr3 12912633 12912641 CREB1 JASPAR yes 508807
chr3 12912633 12912641 CREB1 JASPAR yes 70939168
chr3 12912634 12912646 CREB1 JASPAR yes 508808
chr3 12912634 12912646 CREB1 JASPAR yes 70939169
chr3 12912635 12912640 ATF1 TRANSFAC yes 508809
chr3 12912635 12912640 ATF1 TRANSFAC yes 70939170
chr3 12912659 12912674 TFAP2A JASPAR yes 508810
chr3 12912659 12912674 TFAP2C JASPAR yes 508811
chr3 12912659 12912674 TFAP2A JASPAR yes 70939171
chr3 12912659 12912674 TFAP2C JASPAR yes 70939172
chr3 12912662 12912674 TFAP2A JASPAR yes 508812
chr3 12912662 12912674 TFAP2B JASPAR yes 508813
chr3 12912662 12912674 TFAP2C JASPAR yes 508814
chr3 12912662 12912674 TFAP2A JASPAR yes 70939173
chr3 12912662 12912674 TFAP2B JASPAR yes 70939174
chr3 12912662 12912674 TFAP2C JASPAR yes 70939175
chr3 12912680 12912698 IRF2 JASPAR yes 508815
chr3 12912680 12912698 IRF2 JASPAR yes 70939176
chr3 12912681 12912702 IRF1 JASPAR yes 508816
chr3 12912681 12912702 IRF1 JASPAR yes 70939177
chr3 12912683 12912698 PRDM1 JASPAR yes 508817
chr3 12912683 12912698 STAT2 JASPAR yes 508818
chr3 12912683 12912698 PRDM1 JASPAR yes 70939178
chr3 12912683 12912698 STAT2 JASPAR yes 70939179
chr3 12912684 12912698 STAT1 JASPAR yes 508819
chr3 12912684 12912698 STAT1 JASPAR yes 70939180
chr3 12912685 12912697 IRF1 JASPAR yes 508820
chr3 12912685 12912697 IRF1 JASPAR yes 70939181
chr3 12912690 12912694 YY1 TRANSFAC yes 508821
chr3 12912690 12912694 YY1 TRANSFAC yes 70939182
chr3 12912707 12912711 ESR1 TRANSFAC yes 508822
chr3 12912707 12912711 ESR1 TRANSFAC yes 70939183
chr3 12912728 12912738 TEAD1 JASPAR yes 508823
chr3 12912728 12912738 TEAD4 JASPAR yes 508824
chr3 12912728 12912738 TEAD1 JASPAR yes 70939184
chr3 12912728 12912738 TEAD4 JASPAR yes 70939185
chr3 12912728 12912740 TEAD1 JASPAR yes 508825
chr3 12912728 12912740 TEAD1 JASPAR yes 70939186
chr3 12912729 12912737 TEAD3 JASPAR yes 508826
chr3 12912729 12912737 TEAD3 JASPAR yes 70939187
chr3 12912731 12912746 NFYB JASPAR yes 508827
chr3 12912731 12912746 NFYB JASPAR yes 70939188
chr3 12912733 12912749 NFYA JASPAR yes 508828
chr3 12912733 12912749 NFYA JASPAR yes 70939189
chr3 12912734 12912752 NFYA JASPAR yes 508829
chr3 12912734 12912752 NFYA JASPAR yes 70939190
chr3 12912736 12912747 CDX2 JASPAR yes 508830
chr3 12912736 12912747 CDX2 JASPAR yes 70939191
chr3 12912737 12912748 HOXA10 JASPAR yes 508831
chr3 12912737 12912748 HOXA10 JASPAR yes 70939192
chr3 12912738 12912742 H1TF2 TRANSFAC yes 508832
chr3 12912738 12912742 NFE TRANSFAC yes 508833
chr3 12912738 12912742 SRF TRANSFAC yes 508834
chr3 12912738 12912742 H1TF2 TRANSFAC yes 70939193
chr3 12912738 12912742 NFE TRANSFAC yes 70939194
chr3 12912738 12912742 SRF TRANSFAC yes 70939195
chr3 12912738 12912747 CDX1 JASPAR yes 508835
chr3 12912738 12912747 CDX1 JASPAR yes 70939196
chr3 12912738 12912748 HOXA13 JASPAR yes 508836
chr3 12912738 12912748 HOXB13 JASPAR yes 508837
chr3 12912738 12912748 HOXD13 JASPAR yes 508838
chr3 12912738 12912748 HOXA13 JASPAR yes 70939197
chr3 12912738 12912748 HOXB13 JASPAR yes 70939198
chr3 12912738 12912748 HOXD13 JASPAR yes 70939199
SNP sites on vista39998[chr3:12912593-12912771]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12912630 rs78123615 G A
ATF7 BATF3 CREB3
6557702
chr3 12912724 rs542293998 C T no 6557703
chr3 12912765 rs17612927 T C no 6557704
chr3 12912771 rs79654788 G A no 6557705
Genes possibly regulated by vista39998[chr3:12912593-12912771]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12837971 12913415 + CAND2 ENSG00000144712.7 12837971 0.81 0.93 3421 25378
chr3 12875984 12883087 - RPL32 ENSG00000144713.8 12883087 0.74 1.0 3422 70494
Expression level of Genes
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miRNAs possibly regulated by vista39998[chr3:12912593-12912771]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results