EnhancerDB
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  3. vista39999[chr3:12917586-12917878]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39999[chr3:12917586-12917878]
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Tissue distribution of vista39999
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Transcription factor that possibly regulate vista39999[chr3:12917586-12917878]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12917380 12917821 CTCF UCSC Txn Factor no Conserved 108528256
chr3 12917517 12917726 CTCFL UCSC Txn Factor no Conserved 108528257
chr3 12917616 12917627 GCM1 JASPAR yes 509058
chr3 12917616 12917627 GCM1 JASPAR yes 70939200
chr3 12917616 12917635 CTCF JASPAR yes 509059
chr3 12917616 12917635 CTCF JASPAR yes 70939201
chr3 12917631 12917643 HINFP JASPAR yes 509060
chr3 12917631 12917643 HINFP JASPAR yes 70939202
chr3 12917634 12917653 CTCF JASPAR yes 509061
chr3 12917634 12917653 CTCF JASPAR yes 70939203
chr3 12917635 12917649 GLIS2 JASPAR yes 509062
chr3 12917635 12917649 GLIS2 JASPAR yes 70939204
chr3 12917644 12917665 ZNF263 JASPAR yes 509063
chr3 12917644 12917665 ZNF263 JASPAR yes 70939205
chr3 12917645 12917649 LFA1 TRANSFAC yes 509064
chr3 12917645 12917649 LFA1 TRANSFAC yes 70939206
chr3 12917658 12917669 E2F6 JASPAR yes 509065
chr3 12917658 12917669 E2F6 JASPAR yes 70939207
chr3 12917677 12917682 SP1 TRANSFAC yes 509066
chr3 12917677 12917682 SP1 TRANSFAC yes 70939208
chr3 12917699 12917708 TFAP2A JASPAR yes 509067
chr3 12917699 12917708 TFAP2A JASPAR yes 70939209
chr3 12917706 12917710 H4TF2 TRANSFAC yes 509068
chr3 12917706 12917710 H4TF2 TRANSFAC yes 70939210
chr3 12917714 12917723 SP1 TRANSFAC yes 509069
chr3 12917714 12917723 SP1 TRANSFAC yes 70939211
chr3 12917715 12917723 SP1 TRANSFAC yes 509070
chr3 12917715 12917723 SP1 TRANSFAC yes 70939212
chr3 12917715 12917725 SP1 JASPAR yes 509071
chr3 12917715 12917725 SP1 JASPAR yes 70939213
chr3 12917749 12917759 SP1 JASPAR yes 509072
chr3 12917749 12917759 SP1 JASPAR yes 70939214
chr3 12917750 12917759 SP1 TRANSFAC yes 509073
chr3 12917750 12917759 SP1 TRANSFAC yes 70939215
chr3 12917751 12917756 SP1 TRANSFAC yes 509074
chr3 12917751 12917756 SP1 TRANSFAC yes 70939216
chr3 12917752 12917757 SP1 TRANSFAC yes 509075
chr3 12917752 12917757 SP1 TRANSFAC yes 70939217
chr3 12917752 12917758 SP1 TRANSFAC yes 509076
chr3 12917752 12917758 SP1 TRANSFAC yes 70939218
chr3 12917761 12917767 YY1 JASPAR yes 509077
chr3 12917761 12917767 YY1 JASPAR yes 70939219
chr3 12917775 12917784 SP1 TRANSFAC yes 509078
chr3 12917775 12917784 SP1 TRANSFAC yes 70939220
chr3 12917776 12917782 SP1 TRANSFAC yes 509079
chr3 12917776 12917782 SP1 TRANSFAC yes 70939221
chr3 12917776 12917786 SP1 JASPAR yes 509080
chr3 12917776 12917786 SP1 JASPAR yes 70939222
chr3 12917777 12917784 SP1 TRANSFAC yes 509081
chr3 12917777 12917784 SP1 TRANSFAC yes 70939223
chr3 12917778 12917783 SP1 TRANSFAC yes 509082
chr3 12917778 12917783 SP1 TRANSFAC yes 70939224
chr3 12917778 12917784 SP1 TRANSFAC yes 509083
chr3 12917778 12917784 SP1 TRANSFAC yes 70939225
chr3 12917778 12917785 SP1 TRANSFAC yes 509084
chr3 12917778 12917785 SP1 TRANSFAC yes 70939226
chr3 12917779 12917793 ZIC1 JASPAR yes 509085
chr3 12917779 12917793 ZIC1 JASPAR yes 70939227
chr3 12917779 12917794 ZIC3 JASPAR yes 509086
chr3 12917779 12917794 ZIC4 JASPAR yes 509087
chr3 12917779 12917794 ZIC3 JASPAR yes 70939228
chr3 12917779 12917794 ZIC4 JASPAR yes 70939229
chr3 12917783 12917789 SP1 TRANSFAC yes 509088
chr3 12917783 12917789 SP1 TRANSFAC yes 70939230
chr3 12917790 12917809 CTCF JASPAR yes 509089
chr3 12917790 12917809 CTCF JASPAR yes 70939231
chr3 12917796 12917810 PLAG1 JASPAR yes 509090
chr3 12917796 12917810 PLAG1 JASPAR yes 70939232
chr3 12917806 12917816 SP1 JASPAR yes 509091
chr3 12917806 12917816 SP1 JASPAR yes 70939233
chr3 12917808 12917819 ELK4 JASPAR yes 509092
chr3 12917808 12917819 FLI1 JASPAR yes 509093
chr3 12917808 12917819 ELK4 JASPAR yes 70939234
chr3 12917808 12917819 FLI1 JASPAR yes 70939235
chr3 12917809 12917819 GABPA JASPAR yes 509094
chr3 12917809 12917819 GABPA JASPAR yes 70939236
chr3 12917809 12917822 ELF1 JASPAR yes 509095
chr3 12917809 12917822 ELF1 JASPAR yes 70939237
chr3 12917811 12917817 ETS1 JASPAR yes 509096
chr3 12917811 12917817 SPI1 JASPAR yes 509097
chr3 12917811 12917817 ETS1 JASPAR yes 70939238
chr3 12917811 12917817 SPI1 JASPAR yes 70939239
chr3 12917811 12917821 ELK1 JASPAR yes 509098
chr3 12917811 12917821 ELK1 JASPAR yes 70939240
chr3 12917811 12917830 RFX2 JASPAR yes 509099
chr3 12917811 12917830 RFX2 JASPAR yes 70939241
chr3 12917815 12917831 RFX2 JASPAR yes 509100
chr3 12917815 12917831 RFX3 JASPAR yes 509101
chr3 12917815 12917831 RFX4 JASPAR yes 509102
chr3 12917815 12917831 RFX5 JASPAR yes 509103
chr3 12917815 12917831 RFX2 JASPAR yes 70939242
chr3 12917815 12917831 RFX3 JASPAR yes 70939243
chr3 12917815 12917831 RFX4 JASPAR yes 70939244
chr3 12917815 12917831 RFX5 JASPAR yes 70939245
chr3 12917816 12917835 RFX2 JASPAR yes 509104
chr3 12917816 12917835 RFX2 JASPAR yes 70939246
chr3 12917848 12917852 NFE TRANSFAC yes 509105
chr3 12917848 12917852 NFE TRANSFAC yes 70939247
chr3 12917849 12917861 INSM1 JASPAR yes 509106
chr3 12917849 12917861 INSM1 JASPAR yes 70939248
chr3 12917864 12917879 TFAP2A JASPAR yes 509107
chr3 12917864 12917879 TFAP2A JASPAR yes 70939249
chr3 12917866 12917881 TFAP2C JASPAR yes 509108
chr3 12917866 12917881 TFAP2C JASPAR yes 70939250
chr3 12917867 12917878 TFAP2A JASPAR yes 509109
chr3 12917867 12917878 TFAP2B JASPAR yes 509110
chr3 12917867 12917878 TFAP2C JASPAR yes 509111
chr3 12917867 12917878 TFAP2A JASPAR yes 70939251
chr3 12917867 12917878 TFAP2B JASPAR yes 70939252
chr3 12917867 12917878 TFAP2C JASPAR yes 70939253
chr3 12917868 12917877 TFAP2A JASPAR yes 509112
chr3 12917868 12917877 TFAP2A JASPAR yes 70939254
chr3 12917872 12917877 SP1 TRANSFAC yes 509113
chr3 12917872 12917877 SP1 TRANSFAC yes 70939255
SNP sites on vista39999[chr3:12917586-12917878]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12917594 rs113347062 G A
CTCF CTCFL
6557733
chr3 12917672 rs190811323 C T
CTCF CTCFL
6557734
chr3 12917674 rs182354580 C T
CTCF CTCFL
6557735
chr3 12917700 rs146993015 G A
CTCF CTCFL TFAP2A
6557736
chr3 12917835 rs112215053 T C
RFX2
6557737
Genes possibly regulated by vista39999[chr3:12917586-12917878]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12837971 12913415 + CAND2 ENSG00000144712.7 12837971 0.81 0.93 3421 20385
chr3 12875984 12883087 - RPL32 ENSG00000144713.8 12883087 0.74 1.0 3422 65501
Expression level of Genes
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miRNAs possibly regulated by vista39999[chr3:12917586-12917878]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results