EnhancerDB
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  3. vista40002[chr3:13035460-13035932]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40002[chr3:13035460-13035932]
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Tissue distribution of vista40002
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Transcription factor that possibly regulate vista40002[chr3:13035460-13035932]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13035015 13036887 POLR2A UCSC Txn Factor no Conserved 108528271
chr3 13035217 13036658 PHF8 UCSC Txn Factor no Conserved 108528272
chr3 13035464 13035475 E2F1 JASPAR yes 70939336
chr3 13035468 13035473 SP1 TRANSFAC yes 70939337
chr3 13035476 13035490 ZIC1 JASPAR yes 70939338
chr3 13035476 13035491 ZIC3 JASPAR yes 70939339
chr3 13035476 13035491 ZIC4 JASPAR yes 70939340
chr3 13035477 13035482 SP1 TRANSFAC yes 70939341
chr3 13035477 13035483 SP1 TRANSFAC yes 70939342
chr3 13035488 13035499 NFKB1 JASPAR yes 70939343
chr3 13035489 13035493 LFA1 TRANSFAC yes 70939344
chr3 13035489 13035499 NFKB1 JASPAR yes 70939345
chr3 13035507 13035521 PLAG1 JASPAR yes 70939346
chr3 13035511 13035523 ZBTB7A JASPAR yes 70939347
chr3 13035512 13035524 ZBTB7B JASPAR yes 70939348
chr3 13035512 13035524 ZBTB7C JASPAR yes 70939349
chr3 13035517 13035523 SP1 TRANSFAC yes 70939350
chr3 13035519 13035524 SP1 TRANSFAC yes 70939351
chr3 13035521 13035530 TFAP2A JASPAR yes 70939352
chr3 13035525 13035530 SP1 TRANSFAC yes 70939353
chr3 13035556 13035577 ZNF263 JASPAR yes 70939354
chr3 13035559 13035565 SP1 TRANSFAC yes 70939355
chr3 13035586 13035590 H4TF2 TRANSFAC yes 70939356
chr3 13035589 13035594 SP1 TRANSFAC yes 70939357
chr3 13035589 13035598 THAP1 JASPAR yes 70939358
chr3 13035590 13035602 TFAP2A JASPAR yes 70939359
chr3 13035610 13035629 REST JASPAR yes 70939360
chr3 13035617 13035626 TFAP2A JASPAR yes 70939361
chr3 13035645 13035660 RFX5 JASPAR yes 70939362
chr3 13035654 13035668 GLIS2 JASPAR yes 70939363
chr3 13035658 13035668 ZNF740 JASPAR yes 70939364
chr3 13035662 13035669 SP1 TRANSFAC yes 70939365
chr3 13035662 13035672 SP1 JASPAR yes 70939366
chr3 13035663 13035671 SP1 TRANSFAC yes 70939367
chr3 13035664 13035669 SP1 TRANSFAC yes 70939368
chr3 13035665 13035670 SP1 TRANSFAC yes 70939369
chr3 13035665 13035671 SP1 TRANSFAC yes 70939370
chr3 13035666 13035674 SP1 TRANSFAC yes 70939371
chr3 13035666 13035674 WT1 TRANSFAC yes 70939372
chr3 13035668 13035675 SP1 TRANSFAC yes 70939373
chr3 13035668 13035678 SP1 JASPAR yes 70939374
chr3 13035669 13035677 SP1 TRANSFAC yes 70939375
chr3 13035669 13035680 NRF1 JASPAR yes 70939376
chr3 13035670 13035675 SP1 TRANSFAC yes 70939377
chr3 13035671 13035676 SP1 TRANSFAC yes 70939378
chr3 13035713 13035732 CTCF JASPAR yes 70939379
chr3 13035723 13035728 SP1 TRANSFAC yes 70939380
chr3 13035723 13035729 SP1 TRANSFAC yes 70939381
chr3 13035727 13035732 SP1 TRANSFAC yes 70939382
chr3 13035745 13035750 SP1 TRANSFAC yes 70939383
chr3 13035753 13035762 THAP1 JASPAR yes 70939384
chr3 13035755 13035762 SP1 TRANSFAC yes 70939385
chr3 13035756 13035763 SP1 TRANSFAC yes 70939386
chr3 13035757 13035762 SP1 TRANSFAC yes 70939387
chr3 13035757 13035763 SP1 TRANSFAC yes 70939388
chr3 13035765 13035770 SP1 TRANSFAC yes 70939389
chr3 13035767 13035778 NRF1 JASPAR yes 70939390
chr3 13035775 13035788 NR2F1 JASPAR yes 70939391
chr3 13035777 13035788 ESRRA JASPAR yes 70939392
chr3 13035777 13035788 ESRRB JASPAR yes 70939393
chr3 13035778 13035786 NR4A2 JASPAR yes 70939394
chr3 13035783 13035797 GLIS3 JASPAR yes 70939395
chr3 13035786 13035791 SP1 TRANSFAC yes 70939396
chr3 13035818 13035828 MZF1 JASPAR yes 70939397
chr3 13035826 13035832 ETS1 JASPAR yes 70939398
chr3 13035826 13035832 SPI1 JASPAR yes 70939399
chr3 13035830 13035838 TBX5 JASPAR yes 70939400
chr3 13035853 13035865 INSM1 JASPAR yes 70939401
chr3 13035858 13035865 SP1 TRANSFAC yes 70939402
chr3 13035858 13035868 SP1 JASPAR yes 70939403
chr3 13035859 13035867 SP1 TRANSFAC yes 70939404
chr3 13035859 13035868 SP1 TRANSFAC yes 70939405
chr3 13035859 13035869 SP1 JASPAR yes 70939406
chr3 13035860 13035865 SP1 TRANSFAC yes 70939407
chr3 13035860 13035871 E2F4 JASPAR yes 70939408
chr3 13035861 13035866 SP1 TRANSFAC yes 70939409
chr3 13035861 13035867 SP1 TRANSFAC yes 70939410
chr3 13035877 13035882 SP1 TRANSFAC yes 70939411
chr3 13035877 13035883 SP1 TRANSFAC yes 70939412
chr3 13035891 13035903 CREB1 JASPAR yes 70939413
chr3 13035892 13035897 ATF1 TRANSFAC yes 70939414
chr3 13035894 13035904 SREBF1 JASPAR yes 70939415
chr3 13035894 13035904 SREBF2 JASPAR yes 70939416
SNP sites on vista40002[chr3:13035460-13035932]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13035664 rs544077286 G A
GLIS2 PHF8 POLR2A SP1 ZNF740
6558912
chr3 13035858 rs360837 A G
INSM1 PHF8 POLR2A SP1
6558913
Genes possibly regulated by vista40002[chr3:13035460-13035932]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12938719 13114617 - IQSEC1 ENSG00000144711.9 13114617 0.71 0.99 3423 21315
Expression level of Genes
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miRNAs possibly regulated by vista40002[chr3:13035460-13035932]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results