EnhancerDB
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  3. vista40004[chr3:13042124-13042470]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40004[chr3:13042124-13042470]
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Tissue distribution of vista40004
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Transcription factor that possibly regulate vista40004[chr3:13042124-13042470]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13042138 13042147 ZEB1 JASPAR yes 520256
chr3 13042138 13042147 ZEB1 JASPAR yes 70939497
chr3 13042149 13042168 CTCF JASPAR yes 520257
chr3 13042149 13042168 CTCF JASPAR yes 70939498
chr3 13042160 13042165 ETS2 TRANSFAC yes 520258
chr3 13042160 13042165 ETS2 TRANSFAC yes 70939499
chr3 13042182 13042195 TFAP2A JASPAR yes 520259
chr3 13042182 13042195 TFAP2B JASPAR yes 520260
chr3 13042182 13042195 TFAP2C JASPAR yes 520261
chr3 13042182 13042195 TFAP2A JASPAR yes 70939500
chr3 13042182 13042195 TFAP2B JASPAR yes 70939501
chr3 13042182 13042195 TFAP2C JASPAR yes 70939502
chr3 13042183 13042196 TFAP2B JASPAR yes 520262
chr3 13042183 13042196 TFAP2B JASPAR yes 70939503
chr3 13042203 13042208 TFAP2A TRANSFAC yes 520263
chr3 13042203 13042208 TFAP2A TRANSFAC yes 70939504
chr3 13042203 13042209 MZF1 JASPAR yes 520264
chr3 13042203 13042209 MZF1 JASPAR yes 70939505
chr3 13042219 13042240 ZNF263 JASPAR yes 520265
chr3 13042219 13042240 ZNF263 JASPAR yes 70939506
chr3 13042224 13042245 ZNF263 JASPAR yes 520266
chr3 13042224 13042245 ZNF263 JASPAR yes 70939507
chr3 13042226 13042232 MAZ TRANSFAC yes 520267
chr3 13042226 13042232 MAZ TRANSFAC yes 70939508
chr3 13042235 13042256 ZNF263 JASPAR yes 520268
chr3 13042235 13042256 ZNF263 JASPAR yes 70939509
chr3 13042245 13042250 MYC TRANSFAC yes 520269
chr3 13042245 13042250 MYC TRANSFAC yes 70939510
chr3 13042250 13042255 SP1 TRANSFAC yes 520270
chr3 13042250 13042255 SP1 TRANSFAC yes 70939511
chr3 13042250 13042259 HIC2 JASPAR yes 520271
chr3 13042250 13042259 HIC2 JASPAR yes 70939512
chr3 13042253 13042257 LFA1 TRANSFAC yes 520272
chr3 13042253 13042257 LFA1 TRANSFAC yes 70939513
chr3 13042256 13042271 TFAP2A JASPAR yes 520273
chr3 13042256 13042271 TFAP2C JASPAR yes 520274
chr3 13042256 13042271 TFAP2A JASPAR yes 70939514
chr3 13042256 13042271 TFAP2C JASPAR yes 70939515
chr3 13042259 13042270 TFAP2A JASPAR yes 520275
chr3 13042259 13042270 TFAP2B JASPAR yes 520276
chr3 13042259 13042270 TFAP2C JASPAR yes 520277
chr3 13042259 13042270 TFAP2A JASPAR yes 70939516
chr3 13042259 13042270 TFAP2B JASPAR yes 70939517
chr3 13042259 13042270 TFAP2C JASPAR yes 70939518
chr3 13042260 13042269 TFAP2A JASPAR yes 520278
chr3 13042260 13042269 TFAP2A JASPAR yes 70939519
chr3 13042269 13042280 CDX2 JASPAR yes 520279
chr3 13042269 13042280 CDX2 JASPAR yes 70939520
chr3 13042269 13042284 FOXP1 JASPAR yes 520280
chr3 13042269 13042284 FOXP1 JASPAR yes 70939521
chr3 13042270 13042281 FOXH1 JASPAR yes 520281
chr3 13042270 13042281 HOXA10 JASPAR yes 520282
chr3 13042270 13042281 FOXH1 JASPAR yes 70939522
chr3 13042270 13042281 HOXA10 JASPAR yes 70939523
chr3 13042271 13042280 CDX1 JASPAR yes 520283
chr3 13042271 13042280 CDX1 JASPAR yes 70939524
chr3 13042271 13042281 HOXA13 JASPAR yes 520284
chr3 13042271 13042281 HOXB13 JASPAR yes 520285
chr3 13042271 13042281 HOXD13 JASPAR yes 520286
chr3 13042271 13042281 HOXA13 JASPAR yes 70939525
chr3 13042271 13042281 HOXB13 JASPAR yes 70939526
chr3 13042271 13042281 HOXD13 JASPAR yes 70939527
chr3 13042272 13042283 FOXP2 JASPAR yes 520287
chr3 13042272 13042283 FOXP2 JASPAR yes 70939528
chr3 13042272 13042284 FOXI1 JASPAR yes 520288
chr3 13042272 13042284 FOXI1 JASPAR yes 70939529
chr3 13042274 13042282 FOXG1 JASPAR yes 520289
chr3 13042274 13042282 FOXG1 JASPAR yes 70939530
chr3 13042276 13042282 HiNF-A TRANSFAC yes 520290
chr3 13042276 13042282 HiNF-A TRANSFAC yes 70939531
chr3 13042304 13042310 SOX10 JASPAR yes 520291
chr3 13042304 13042310 SOX10 JASPAR yes 70939532
chr3 13042308 13042328 ESR1 JASPAR yes 520292
chr3 13042308 13042328 ESR1 JASPAR yes 70939533
chr3 13042336 13042341 GATA2 JASPAR yes 520293
chr3 13042336 13042341 GATA2 JASPAR yes 70939534
chr3 13042344 13042348 NFE TRANSFAC yes 520294
chr3 13042344 13042348 NFE TRANSFAC yes 70939535
chr3 13042344 13042349 GATA1 TRANSFAC yes 520295
chr3 13042344 13042349 GATA1 TRANSFAC yes 70939536
chr3 13042344 13042350 GATA3 JASPAR yes 520296
chr3 13042344 13042350 GATA3 JASPAR yes 70939537
chr3 13042389 13042393 YY1 TRANSFAC yes 520297
chr3 13042389 13042393 YY1 TRANSFAC yes 70939538
chr3 13042396 13042405 ZEB1 JASPAR yes 520298
chr3 13042396 13042405 ZEB1 JASPAR yes 70939539
chr3 13042396 13042407 TBX2 JASPAR yes 520299
chr3 13042396 13042407 TBX2 JASPAR yes 70939540
chr3 13042396 13042409 EOMES JASPAR yes 520300
chr3 13042396 13042409 EOMES JASPAR yes 70939541
chr3 13042397 13042407 TBR1 JASPAR yes 520301
chr3 13042397 13042407 TBR1 JASPAR yes 70939542
chr3 13042398 13042413 FOXP1 JASPAR yes 520302
chr3 13042398 13042413 FOXP1 JASPAR yes 70939543
chr3 13042399 13042410 FOXA1 JASPAR yes 520303
chr3 13042399 13042410 FOXA1 JASPAR yes 70939544
chr3 13042401 13042412 FOXP2 JASPAR yes 520304
chr3 13042401 13042412 FOXP2 JASPAR yes 70939545
chr3 13042414 13042426 TEAD1 JASPAR yes 520305
chr3 13042414 13042426 TEAD1 JASPAR yes 70939546
chr3 13042422 13042427 TFAP2A TRANSFAC yes 520306
chr3 13042422 13042427 TFAP2A TRANSFAC yes 70939547
chr3 13042422 13042428 MZF1 JASPAR yes 520307
chr3 13042422 13042428 MZF1 JASPAR yes 70939548
chr3 13042440 13042461 IRF1 JASPAR yes 520308
chr3 13042440 13042461 IRF1 JASPAR yes 70939549
chr3 13042442 13042463 IRF1 JASPAR yes 520309
chr3 13042442 13042463 IRF1 JASPAR yes 70939550
chr3 13042444 13042465 IRF1 JASPAR yes 520310
chr3 13042444 13042465 IRF1 JASPAR yes 70939551
chr3 13042445 13042460 FOXP1 JASPAR yes 520311
chr3 13042445 13042460 FOXP1 JASPAR yes 70939552
chr3 13042445 13042466 IRF1 JASPAR yes 520312
chr3 13042445 13042466 IRF1 JASPAR yes 70939553
chr3 13042446 13042467 IRF1 JASPAR yes 520313
chr3 13042446 13042467 IRF1 JASPAR yes 70939554
chr3 13042447 13042462 FOXP1 JASPAR yes 520314
chr3 13042447 13042462 FOXP1 JASPAR yes 70939555
chr3 13042447 13042468 IRF1 JASPAR yes 520315
chr3 13042447 13042468 IRF1 JASPAR yes 70939556
chr3 13042448 13042463 FOXP1 JASPAR yes 520316
chr3 13042448 13042463 FOXP1 JASPAR yes 70939557
chr3 13042448 13042469 IRF1 JASPAR yes 520317
chr3 13042448 13042469 IRF1 JASPAR yes 70939558
chr3 13042449 13042464 FOXP1 JASPAR yes 520318
chr3 13042449 13042464 FOXP1 JASPAR yes 70939559
chr3 13042450 13042465 FOXP1 JASPAR yes 520319
chr3 13042450 13042465 FOXP1 JASPAR yes 70939560
chr3 13042451 13042466 FOXP1 JASPAR yes 520320
chr3 13042451 13042466 FOXP1 JASPAR yes 70939561
chr3 13042452 13042467 FOXP1 JASPAR yes 520321
chr3 13042452 13042467 FOXP1 JASPAR yes 70939562
chr3 13042453 13042468 FOXP1 JASPAR yes 520322
chr3 13042453 13042468 FOXP1 JASPAR yes 70939563
chr3 13042454 13042469 FOXP1 JASPAR yes 520323
chr3 13042454 13042469 FOXP1 JASPAR yes 70939564
chr3 13042455 13042470 FOXP1 JASPAR yes 520324
chr3 13042455 13042470 FOXP1 JASPAR yes 70939565
chr3 13042456 13042471 FOXP1 JASPAR yes 520325
chr3 13042456 13042471 FOXP1 JASPAR yes 70939566
SNP sites on vista40004[chr3:13042124-13042470]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13042132 rs467008 A G no 6558982
chr3 13042236 rs562735493 G A
ZNF263
6558983
chr3 13042259 rs141794868 C T
HIC2 TFAP2A TFAP2B TFAP2C
6558984
chr3 13042268 rs73147210 G A
TFAP2A TFAP2B TFAP2C
6558985
chr3 13042284 rs147752872 A G
FOXI1 FOXP1
6558986
chr3 13042423 rs141083748 T G
MZF1 TEAD1 TFAP2A
6558987
chr3 13042448 rs10553726 CTTT C
FOXP1 IRF1
6558988
chr3 13042448 rs750266450 CTTT C
FOXP1 IRF1
6558989
Genes possibly regulated by vista40004[chr3:13042124-13042470]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12938719 13114617 - IQSEC1 ENSG00000144711.9 13114617 0.71 0.99 3423 27853
Expression level of Genes
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miRNAs possibly regulated by vista40004[chr3:13042124-13042470]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results