EnhancerDB
  1. Home
  2. Enhancers
  3. vista40006[chr3:13049028-13049396]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40006[chr3:13049028-13049396]
Back to top
Tissue distribution of vista40006
Back to top
Transcription factor that possibly regulate vista40006[chr3:13049028-13049396]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13049037 13049341 GATA2 UCSC Txn Factor no Conserved 108528285
chr3 13049046 13049240 JUND UCSC Txn Factor no Conserved 108528286
chr3 13049057 13049339 TEAD4 UCSC Txn Factor no Conserved 108528287
chr3 13049059 13049341 EGR1 UCSC Txn Factor no Conserved 108528288
chr3 13049066 13049072 GATA3 JASPAR yes 521308
chr3 13049066 13049072 GATA3 JASPAR yes 70939627
chr3 13049071 13049075 LFA1 TRANSFAC yes 521309
chr3 13049071 13049075 LFA1 TRANSFAC yes 70939628
chr3 13049109 13049124 JUND JASPAR yes 521310
chr3 13049109 13049124 JUND JASPAR yes 70939629
chr3 13049112 13049127 JUND JASPAR yes 521311
chr3 13049112 13049127 JUND JASPAR yes 70939630
chr3 13049113 13049126 JUN JASPAR yes 521312
chr3 13049113 13049126 JUN JASPAR yes 70939631
chr3 13049146 13049150 YY1 TRANSFAC yes 521313
chr3 13049146 13049150 YY1 TRANSFAC yes 70939632
chr3 13049149 13049163 GATA2 JASPAR yes 521314
chr3 13049149 13049163 GATA2 JASPAR yes 70939633
chr3 13049163 13049167 YY1 TRANSFAC yes 521315
chr3 13049163 13049167 YY1 TRANSFAC yes 70939634
chr3 13049165 13049175 TBR1 JASPAR yes 521316
chr3 13049165 13049175 TBR1 JASPAR yes 70939635
chr3 13049168 13049178 NKX2-3 JASPAR yes 521317
chr3 13049168 13049178 NKX2-3 JASPAR yes 70939636
chr3 13049169 13049178 NKX2-8 JASPAR yes 521318
chr3 13049169 13049178 NKX2-8 JASPAR yes 70939637
chr3 13049179 13049193 SPI1 JASPAR yes 521319
chr3 13049179 13049193 SPIC JASPAR yes 521320
chr3 13049179 13049193 SPI1 JASPAR yes 70939638
chr3 13049179 13049193 SPIC JASPAR yes 70939639
chr3 13049192 13049198 TCF4 TRANSFAC yes 521321
chr3 13049192 13049198 TCF4 TRANSFAC yes 70939640
chr3 13049200 13049211 STAT3 JASPAR yes 521322
chr3 13049200 13049211 STAT3 JASPAR yes 70939641
chr3 13049232 13049245 ELF3 JASPAR yes 521323
chr3 13049232 13049245 ELF3 JASPAR yes 70939642
chr3 13049233 13049245 ELF4 JASPAR yes 521324
chr3 13049233 13049245 ELF4 JASPAR yes 70939643
chr3 13049248 13049252 NFE TRANSFAC yes 521325
chr3 13049248 13049252 NFE TRANSFAC yes 70939644
chr3 13049248 13049253 GATA1 TRANSFAC yes 521326
chr3 13049248 13049253 GATA1 TRANSFAC yes 70939645
chr3 13049248 13049254 GATA3 JASPAR yes 521327
chr3 13049248 13049254 GATA3 JASPAR yes 70939646
chr3 13049253 13049263 RUNX3 JASPAR yes 521328
chr3 13049253 13049263 RUNX3 JASPAR yes 70939647
chr3 13049254 13049263 RUNX2 JASPAR yes 521329
chr3 13049254 13049263 RUNX2 JASPAR yes 70939648
chr3 13049290 13049310 RREB1 JASPAR yes 521330
chr3 13049290 13049310 RREB1 JASPAR yes 70939649
chr3 13049319 13049325 YY1 JASPAR yes 521331
chr3 13049319 13049325 YY1 JASPAR yes 70939650
chr3 13049327 13049346 REST JASPAR yes 521332
chr3 13049327 13049346 REST JASPAR yes 70939651
chr3 13049330 13049334 NFE TRANSFAC yes 521333
chr3 13049330 13049334 NFE TRANSFAC yes 70939652
chr3 13049333 13049344 EBF1 JASPAR yes 521334
chr3 13049333 13049344 EBF1 JASPAR yes 70939653
chr3 13049338 13049343 SP1 TRANSFAC yes 521335
chr3 13049338 13049343 SP1 TRANSFAC yes 70939654
chr3 13049352 13049360 SP1 TRANSFAC yes 521336
chr3 13049352 13049360 SP1 TRANSFAC yes 70939655
chr3 13049352 13049362 SP1 JASPAR yes 521337
chr3 13049352 13049362 SP1 JASPAR yes 70939656
chr3 13049353 13049359 SP1 TRANSFAC yes 521338
chr3 13049353 13049359 SP1 TRANSFAC yes 70939657
chr3 13049353 13049363 SP1 JASPAR yes 521339
chr3 13049353 13049363 SP1 JASPAR yes 70939658
chr3 13049354 13049361 SP1 TRANSFAC yes 521340
chr3 13049354 13049361 SP1 TRANSFAC yes 70939659
chr3 13049355 13049360 SP1 TRANSFAC yes 521341
chr3 13049355 13049360 SP1 TRANSFAC yes 70939660
chr3 13049355 13049361 SP1 TRANSFAC yes 521342
chr3 13049355 13049361 SP1 TRANSFAC yes 70939661
chr3 13049370 13049384 GLIS3 JASPAR yes 521343
chr3 13049370 13049384 GLIS3 JASPAR yes 70939662
chr3 13049393 13049397 H1TF2 TRANSFAC yes 521344
chr3 13049393 13049397 NFE TRANSFAC yes 521345
chr3 13049393 13049397 SRF TRANSFAC yes 521346
chr3 13049393 13049397 H1TF2 TRANSFAC yes 70939663
chr3 13049393 13049397 NFE TRANSFAC yes 70939664
chr3 13049393 13049397 SRF TRANSFAC yes 70939665
SNP sites on vista40006[chr3:13049028-13049396]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13049030 rs114611838 G A,T no 6559062
chr3 13049031 rs149324680 C T no 6559063
chr3 13049221 rs547141734 G A
EGR1 GATA2 JUND TEAD4
6559064
chr3 13049251 rs144649980 A G
EGR1 GATA1 GATA2 GATA3 NFE TEAD4
6559065
chr3 13049326 rs9853668 C T
EGR1 GATA2 TEAD4
6559066
Genes possibly regulated by vista40006[chr3:13049028-13049396]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12938719 13114617 - IQSEC1 ENSG00000144711.9 13114617 0.71 0.99 3423 34779
Expression level of Genes
Back to top
miRNAs possibly regulated by vista40006[chr3:13049028-13049396]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results