EnhancerDB
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  3. vista40008[chr3:13061201-13061436]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40008[chr3:13061201-13061436]
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Tissue distribution of vista40008
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Transcription factor that possibly regulate vista40008[chr3:13061201-13061436]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13061232 13061242 NFIA JASPAR yes 522992
chr3 13061232 13061242 NFIA JASPAR yes 70939672
chr3 13061234 13061240 NFIC JASPAR yes 522993
chr3 13061234 13061240 NFIC JASPAR yes 70939673
chr3 13061235 13061245 HESX1 JASPAR yes 522994
chr3 13061235 13061245 HESX1 JASPAR yes 70939674
chr3 13061236 13061240 H1TF2 TRANSFAC yes 522995
chr3 13061236 13061240 NFE TRANSFAC yes 522996
chr3 13061236 13061240 SRF TRANSFAC yes 522997
chr3 13061236 13061240 H1TF2 TRANSFAC yes 70939675
chr3 13061236 13061240 NFE TRANSFAC yes 70939676
chr3 13061236 13061240 SRF TRANSFAC yes 70939677
chr3 13061236 13061244 DLX6 JASPAR yes 522998
chr3 13061236 13061244 MSX2 JASPAR yes 522999
chr3 13061236 13061244 DLX6 JASPAR yes 70939678
chr3 13061236 13061244 MSX2 JASPAR yes 70939679
chr3 13061245 13061254 HIC2 JASPAR yes 523000
chr3 13061245 13061254 HIC2 JASPAR yes 70939680
chr3 13061247 13061267 RREB1 JASPAR yes 523001
chr3 13061247 13061267 RREB1 JASPAR yes 70939681
chr3 13061248 13061268 RREB1 JASPAR yes 523002
chr3 13061248 13061268 RREB1 JASPAR yes 70939682
chr3 13061252 13061272 RREB1 JASPAR yes 523003
chr3 13061252 13061272 RREB1 JASPAR yes 70939683
chr3 13061253 13061263 SP1 JASPAR yes 523004
chr3 13061253 13061263 SP1 JASPAR yes 70939684
chr3 13061253 13061273 RREB1 JASPAR yes 523005
chr3 13061253 13061273 RREB1 JASPAR yes 70939685
chr3 13061254 13061275 ZNF263 JASPAR yes 523006
chr3 13061254 13061275 ZNF263 JASPAR yes 70939686
chr3 13061267 13061285 NFYA JASPAR yes 523007
chr3 13061267 13061285 NFYA JASPAR yes 70939687
chr3 13061267 13061288 REST JASPAR yes 523008
chr3 13061267 13061288 REST JASPAR yes 70939688
chr3 13061270 13061286 NFYA JASPAR yes 523009
chr3 13061270 13061286 NFYA JASPAR yes 70939689
chr3 13061273 13061288 NFYB JASPAR yes 523010
chr3 13061273 13061288 NFYB JASPAR yes 70939690
chr3 13061329 13061333 NFE TRANSFAC yes 523011
chr3 13061329 13061333 NFE TRANSFAC yes 70939691
chr3 13061329 13061342 SMAD2 JASPAR yes 523012
chr3 13061329 13061342 SMAD2 JASPAR yes 70939692
chr3 13061333 13061337 NFE TRANSFAC yes 523013
chr3 13061333 13061337 NFE TRANSFAC yes 70939693
chr3 13061338 13061348 NKX2-3 JASPAR yes 523014
chr3 13061338 13061348 NKX2-3 JASPAR yes 70939694
chr3 13061339 13061348 NKX2-8 JASPAR yes 523015
chr3 13061339 13061348 NKX2-8 JASPAR yes 70939695
chr3 13061343 13061350 MEIS1 JASPAR yes 523016
chr3 13061343 13061350 MEIS1 JASPAR yes 70939696
chr3 13061343 13061351 MEIS2 JASPAR yes 523017
chr3 13061343 13061351 MEIS3 JASPAR yes 523018
chr3 13061343 13061351 MEIS2 JASPAR yes 70939697
chr3 13061343 13061351 MEIS3 JASPAR yes 70939698
chr3 13061346 13061361 RUNX2 JASPAR yes 523019
chr3 13061346 13061361 RUNX2 JASPAR yes 70939699
chr3 13061352 13061358 SOX10 JASPAR yes 523020
chr3 13061352 13061358 SOX10 JASPAR yes 70939700
chr3 13061359 13061375 ZNF143 JASPAR yes 523021
chr3 13061359 13061375 ZNF143 JASPAR yes 70939701
chr3 13061360 13061374 PLAG1 JASPAR yes 523022
chr3 13061360 13061374 PLAG1 JASPAR yes 70939702
chr3 13061369 13061378 SP1 TRANSFAC yes 523023
chr3 13061369 13061378 SP1 TRANSFAC yes 70939703
chr3 13061369 13061388 PAX5 JASPAR yes 523024
chr3 13061369 13061388 PAX5 JASPAR yes 70939704
chr3 13061370 13061376 SP1 TRANSFAC yes 523025
chr3 13061370 13061376 SP1 TRANSFAC yes 70939705
chr3 13061370 13061380 SP1 JASPAR yes 523026
chr3 13061370 13061380 SP1 JASPAR yes 70939706
chr3 13061371 13061378 SP1 TRANSFAC yes 523027
chr3 13061371 13061378 SP1 TRANSFAC yes 70939707
chr3 13061372 13061377 SP1 TRANSFAC yes 523028
chr3 13061372 13061377 SP1 TRANSFAC yes 70939708
chr3 13061372 13061378 SP1 TRANSFAC yes 523029
chr3 13061372 13061378 SP1 TRANSFAC yes 70939709
chr3 13061385 13061405 ESR1 JASPAR yes 523030
chr3 13061385 13061405 ESR1 JASPAR yes 70939710
chr3 13061387 13061398 USF2 JASPAR yes 523031
chr3 13061387 13061398 USF2 JASPAR yes 70939711
chr3 13061420 13061435 AR JASPAR yes 523032
chr3 13061420 13061435 AR JASPAR yes 70939712
SNP sites on vista40008[chr3:13061201-13061436]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13061298 rs545163008 C T no 6559270
chr3 13061387 rs565347474 C T
ESR1 PAX5 USF2
6559271
Genes possibly regulated by vista40008[chr3:13061201-13061436]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12938719 13114617 - IQSEC1 ENSG00000144711.9 13114617 0.71 0.99 3423 46819
Expression level of Genes
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miRNAs possibly regulated by vista40008[chr3:13061201-13061436]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results