EnhancerDB
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  3. vista40009[chr3:13062449-13062850]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40009[chr3:13062449-13062850]
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Tissue distribution of vista40009
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Transcription factor that possibly regulate vista40009[chr3:13062449-13062850]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13062429 13062450 ZNF263 JASPAR yes 523162
chr3 13062429 13062450 ZNF263 JASPAR yes 70939713
chr3 13062441 13062462 ZNF263 JASPAR yes 523163
chr3 13062441 13062462 ZNF263 JASPAR yes 70939714
chr3 13062442 13062450 EHF JASPAR yes 523165
chr3 13062442 13062450 EHF JASPAR yes 70939715
chr3 13062442 13062463 ZNF263 JASPAR yes 523166
chr3 13062442 13062463 ZNF263 JASPAR yes 70939716
chr3 13062445 13062466 IRF1 JASPAR yes 523167
chr3 13062445 13062466 ZNF263 JASPAR yes 523168
chr3 13062445 13062466 IRF1 JASPAR yes 70939717
chr3 13062445 13062466 ZNF263 JASPAR yes 70939718
chr3 13062449 13062463 SPIC JASPAR yes 523169
chr3 13062449 13062463 SPIC JASPAR yes 70939719
chr3 13062453 13062474 ZNF263 JASPAR yes 523170
chr3 13062453 13062474 ZNF263 JASPAR yes 70939720
chr3 13062454 13062459 ETS2 TRANSFAC yes 523171
chr3 13062454 13062459 ETS2 TRANSFAC yes 70939721
chr3 13062454 13062462 EHF JASPAR yes 523172
chr3 13062454 13062462 EHF JASPAR yes 70939722
chr3 13062458 13062463 ETS2 TRANSFAC yes 523173
chr3 13062458 13062463 ETS2 TRANSFAC yes 70939723
chr3 13062458 13062466 EHF JASPAR yes 523174
chr3 13062458 13062466 EHF JASPAR yes 70939724
chr3 13062462 13062467 ETS2 TRANSFAC yes 523175
chr3 13062462 13062467 ETS2 TRANSFAC yes 70939725
chr3 13062462 13062470 EHF JASPAR yes 523176
chr3 13062462 13062470 EHF JASPAR yes 70939726
chr3 13062466 13062471 ETS2 TRANSFAC yes 523177
chr3 13062466 13062471 ETS2 TRANSFAC yes 70939727
chr3 13062466 13062476 TEAD1 JASPAR yes 523178
chr3 13062466 13062476 TEAD4 JASPAR yes 523179
chr3 13062466 13062476 TEAD1 JASPAR yes 70939728
chr3 13062466 13062476 TEAD4 JASPAR yes 70939729
chr3 13062467 13062475 TEAD3 JASPAR yes 523180
chr3 13062467 13062475 TEAD3 JASPAR yes 70939730
chr3 13062476 13062480 TEAD2 TRANSFAC yes 523181
chr3 13062476 13062480 TEAD2 TRANSFAC yes 70939731
chr3 13062476 13062481 TBP TRANSFAC yes 523182
chr3 13062476 13062481 TBP TRANSFAC yes 70939732
chr3 13062496 13062517 ZNF263 JASPAR yes 523183
chr3 13062496 13062517 ZNF263 JASPAR yes 70939733
chr3 13062499 13062508 THAP1 JASPAR yes 523184
chr3 13062499 13062508 THAP1 JASPAR yes 70939734
chr3 13062500 13062521 ZNF263 JASPAR yes 523185
chr3 13062500 13062521 ZNF263 JASPAR yes 70939735
chr3 13062502 13062506 LFA1 TRANSFAC yes 523186
chr3 13062502 13062506 LFA1 TRANSFAC yes 70939736
chr3 13062506 13062521 PRDM1 JASPAR yes 523187
chr3 13062506 13062521 PRDM1 JASPAR yes 70939737
chr3 13062534 13062543 ZEB1 JASPAR yes 523188
chr3 13062534 13062543 ZEB1 JASPAR yes 70939738
chr3 13062534 13062549 SCRT1 JASPAR yes 523189
chr3 13062534 13062549 SCRT1 JASPAR yes 70939739
chr3 13062536 13062549 SCRT2 JASPAR yes 523190
chr3 13062536 13062549 SCRT2 JASPAR yes 70939740
chr3 13062538 13062544 PTF TRANSFAC yes 523191
chr3 13062538 13062544 PTF TRANSFAC yes 70939741
chr3 13062549 13062555 ZNF354C JASPAR yes 523192
chr3 13062549 13062555 ZNF354C JASPAR yes 70939742
chr3 13062556 13062568 MEF2A JASPAR yes 523193
chr3 13062556 13062568 MEF2A JASPAR yes 70939743
chr3 13062557 13062567 MEF2A JASPAR yes 523194
chr3 13062557 13062567 MEF2A JASPAR yes 70939744
chr3 13062574 13062586 TFAP2A JASPAR yes 523195
chr3 13062574 13062586 TFAP2B JASPAR yes 523196
chr3 13062574 13062586 TFAP2C JASPAR yes 523197
chr3 13062574 13062586 TFAP2A JASPAR yes 70939745
chr3 13062574 13062586 TFAP2B JASPAR yes 70939746
chr3 13062574 13062586 TFAP2C JASPAR yes 70939747
chr3 13062574 13062589 TFAP2A JASPAR yes 523198
chr3 13062574 13062589 TFAP2C JASPAR yes 523199
chr3 13062574 13062589 TFAP2A JASPAR yes 70939748
chr3 13062574 13062589 TFAP2C JASPAR yes 70939749
chr3 13062581 13062586 SP1 TRANSFAC yes 523200
chr3 13062581 13062586 SP1 TRANSFAC yes 70939750
chr3 13062592 13062603 FOXA1 JASPAR yes 523201
chr3 13062592 13062603 FOXA1 JASPAR yes 70939751
chr3 13062598 13062604 HiNF-A TRANSFAC yes 523202
chr3 13062598 13062604 HiNF-A TRANSFAC yes 70939752
chr3 13062621 13062627 NFE2 TRANSFAC yes 523203
chr3 13062621 13062627 NFE2 TRANSFAC yes 70939753
chr3 13062638 13062650 POU2F1 JASPAR yes 523204
chr3 13062638 13062650 POU2F1 JASPAR yes 70939754
chr3 13062638 13062652 POU1F1 JASPAR yes 523205
chr3 13062638 13062652 POU1F1 JASPAR yes 70939755
chr3 13062639 13062651 POU3F2 JASPAR yes 523206
chr3 13062639 13062651 POU3F2 JASPAR yes 70939756
chr3 13062639 13062652 POU2F2 JASPAR yes 523207
chr3 13062639 13062652 POU2F2 JASPAR yes 70939757
chr3 13062661 13062675 SPI1 JASPAR yes 523208
chr3 13062661 13062675 SPI1 JASPAR yes 70939758
chr3 13062678 13062683 TFAP2A TRANSFAC yes 523209
chr3 13062678 13062683 TFAP2A TRANSFAC yes 70939759
chr3 13062678 13062684 MZF1 JASPAR yes 523210
chr3 13062678 13062684 MZF1 JASPAR yes 70939760
chr3 13062680 13062691 NFKB1 JASPAR yes 523211
chr3 13062680 13062691 NFKB1 JASPAR yes 70939761
chr3 13062716 13062727 FLI1 JASPAR yes 523212
chr3 13062716 13062727 FLI1 JASPAR yes 70939762
chr3 13062725 13062746 ZNF263 JASPAR yes 523213
chr3 13062725 13062746 ZNF263 JASPAR yes 70939763
chr3 13062733 13062744 E2F6 JASPAR yes 523214
chr3 13062733 13062744 E2F6 JASPAR yes 70939764
chr3 13062747 13062757 NHLH1 JASPAR yes 523215
chr3 13062747 13062757 NHLH1 JASPAR yes 70939765
chr3 13062771 13062783 TAL1 JASPAR yes 523216
chr3 13062771 13062783 TAL1 JASPAR yes 70939766
chr3 13062783 13062789 SP1 TRANSFAC yes 523217
chr3 13062783 13062789 SP1 TRANSFAC yes 70939767
chr3 13062783 13062793 SP1 JASPAR yes 523218
chr3 13062783 13062793 SP1 JASPAR yes 70939768
chr3 13062785 13062799 EBF1 JASPAR yes 523219
chr3 13062785 13062799 EBF1 JASPAR yes 70939769
chr3 13062785 13062800 ZIC3 JASPAR yes 523220
chr3 13062785 13062800 ZIC4 JASPAR yes 523221
chr3 13062785 13062800 ZIC3 JASPAR yes 70939770
chr3 13062785 13062800 ZIC4 JASPAR yes 70939771
chr3 13062786 13062797 EBF1 JASPAR yes 523222
chr3 13062786 13062797 EBF1 JASPAR yes 70939772
chr3 13062786 13062800 GLIS2 JASPAR yes 523223
chr3 13062786 13062800 GLIS3 JASPAR yes 523224
chr3 13062786 13062800 ZIC1 JASPAR yes 523225
chr3 13062786 13062800 GLIS2 JASPAR yes 70939773
chr3 13062786 13062800 GLIS3 JASPAR yes 70939774
chr3 13062786 13062800 ZIC1 JASPAR yes 70939775
chr3 13062787 13062793 MZF1 JASPAR yes 523226
chr3 13062787 13062793 MZF1 JASPAR yes 70939776
chr3 13062787 13062800 TFAP2A JASPAR yes 523227
chr3 13062787 13062800 TFAP2B JASPAR yes 523228
chr3 13062787 13062800 TFAP2C JASPAR yes 523229
chr3 13062787 13062800 TFAP2A JASPAR yes 70939777
chr3 13062787 13062800 TFAP2B JASPAR yes 70939778
chr3 13062787 13062800 TFAP2C JASPAR yes 70939779
chr3 13062788 13062799 EBF1 JASPAR yes 523230
chr3 13062788 13062799 EBF1 JASPAR yes 70939780
chr3 13062794 13062799 SP1 TRANSFAC yes 523231
chr3 13062794 13062799 SP1 TRANSFAC yes 70939781
chr3 13062809 13062830 ZNF263 JASPAR yes 523232
chr3 13062809 13062830 ZNF263 JASPAR yes 70939782
chr3 13062812 13062830 IRF2 JASPAR yes 523233
chr3 13062812 13062830 IRF2 JASPAR yes 70939783
chr3 13062813 13062834 IRF1 JASPAR yes 523234
chr3 13062813 13062834 IRF1 JASPAR yes 70939784
chr3 13062815 13062830 PRDM1 JASPAR yes 523235
chr3 13062815 13062830 PRDM1 JASPAR yes 70939785
SNP sites on vista40009[chr3:13062449-13062850]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13062475 rs74320990 C T
TEAD1 TEAD3 TEAD4
6559287
chr3 13062633 rs141411866 C A no 6559288
chr3 13062651 rs143455166 C T
POU1F1 POU2F2 POU3F2
6559289
chr3 13062764 rs374656171 G A no 6559290
chr3 13062771 rs55788602 T A
TAL1
6559291
Genes possibly regulated by vista40009[chr3:13062449-13062850]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12938719 13114617 - IQSEC1 ENSG00000144711.9 13114617 0.71 0.99 3423 48233
Expression level of Genes
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miRNAs possibly regulated by vista40009[chr3:13062449-13062850]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results