EnhancerDB
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  3. vista40028[chr3:13517617-13517913]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40028[chr3:13517617-13517913]
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Tissue distribution of vista40028
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Transcription factor that possibly regulate vista40028[chr3:13517617-13517913]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 13517492 13517988 GATA3 UCSC Txn Factor no Conserved 108528311
chr3 13517680 13518109 E2F1 UCSC Txn Factor no Conserved 108528312
chr3 13517683 13517971 ESR1 UCSC Txn Factor no Conserved 108528313
chr3 13517693 13517951 FOXA1 UCSC Txn Factor no Conserved 108528314
chr3 13517721 13517930 FOXA2 UCSC Txn Factor no Conserved 108528315
chr3 13517637 13517642 GATA2 JASPAR yes 70940626
chr3 13517639 13517651 NHLH1 JASPAR yes 70940627
chr3 13517640 13517650 TFAP4 JASPAR yes 70940628
chr3 13517640 13517652 TAL1 JASPAR yes 70940629
chr3 13517648 13517659 EBF1 JASPAR yes 70940630
chr3 13517692 13517697 SP1 TRANSFAC yes 70940631
chr3 13517724 13517729 H4TF1 TRANSFAC yes 70940632
chr3 13517733 13517747 PLAG1 JASPAR yes 70940633
chr3 13517741 13517747 YY1 JASPAR yes 70940634
chr3 13517751 13517755 ESR1 TRANSFAC yes 70940635
chr3 13517781 13517787 GATA3 JASPAR yes 70940636
chr3 13517799 13517818 RFX2 JASPAR yes 70940637
chr3 13517803 13517819 RFX2 JASPAR yes 70940638
chr3 13517803 13517819 RFX3 JASPAR yes 70940639
chr3 13517803 13517819 RFX4 JASPAR yes 70940640
chr3 13517803 13517819 RFX5 JASPAR yes 70940641
chr3 13517804 13517816 YY1 JASPAR yes 70940642
chr3 13517813 13517820 MEIS1 JASPAR yes 70940643
chr3 13517813 13517821 MEIS2 JASPAR yes 70940644
chr3 13517813 13517821 MEIS3 JASPAR yes 70940645
chr3 13517815 13517826 ETV2 JASPAR yes 70940646
chr3 13517816 13517826 ETS1 JASPAR yes 70940647
chr3 13517819 13517824 GATA2 JASPAR yes 70940648
chr3 13517831 13517851 ESR1 JASPAR yes 70940649
chr3 13517834 13517852 ESR1 JASPAR yes 70940650
chr3 13517834 13517852 ESR2 JASPAR yes 70940651
chr3 13517835 13517852 ESR1 JASPAR yes 70940652
chr3 13517835 13517853 ESR2 JASPAR yes 70940653
chr3 13517836 13517851 ESR2 JASPAR yes 70940654
chr3 13517836 13517856 ESR1 JASPAR yes 70940655
chr3 13517837 13517841 ESR1 TRANSFAC yes 70940656
chr3 13517838 13517846 FOXO3 JASPAR yes 70940657
chr3 13517850 13517864 MTF1 JASPAR yes 70940658
chr3 13517856 13517877 REST JASPAR yes 70940659
chr3 13517864 13517869 TFAP2A TRANSFAC yes 70940660
chr3 13517864 13517870 MZF1 JASPAR yes 70940661
chr3 13517872 13517882 SP1 JASPAR yes 70940662
chr3 13517873 13517883 SP1 JASPAR yes 70940663
chr3 13517883 13517887 YY1 TRANSFAC yes 70940664
SNP sites on vista40028[chr3:13517617-13517913]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 13517651 rs535061786 C G
EBF1 GATA3 NHLH1 TAL1
6562635
chr3 13517751 rs2675234 C T
E2F1 ESR1 FOXA1 FOXA2 GATA3
6562636
chr3 13517761 rs2655215 T C
E2F1 ESR1 FOXA1 FOXA2 GATA3
6562637
chr3 13517850 rs574158908 C G
E2F1 ESR1 ESR2 FOXA1 FOXA2 GATA3 MTF1
6562638
Genes possibly regulated by vista40028[chr3:13517617-13517913]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 13357737 13461809 - NUP210 ENSG00000132182.7 13461809 0.82 1.0 3424 44192
chr3 13521224 13547916 + HDAC11 ENSG00000163517.10 13521224 0.68 1.0 3425 96689
chr3 13573824 13679922 + FBLN2 ENSG00000163520.9 13573824 0.83 0.99 3426 44089
Expression level of Genes
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miRNAs possibly regulated by vista40028[chr3:13517617-13517913]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results