EnhancerDB
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  3. vista40059[chr3:14475699-14476221]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40059[chr3:14475699-14476221]
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Tissue distribution of vista40059
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Transcription factor that possibly regulate vista40059[chr3:14475699-14476221]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 14475935 14476152 ZKSCAN1 UCSC Txn Factor no Conserved 108528353
chr3 14475697 14475710 ZBTB18 JASPAR yes 612465
chr3 14475697 14475710 ZBTB18 JASPAR yes 70941963
chr3 14475707 14475718 ESRRA JASPAR yes 612466
chr3 14475707 14475718 ESRRB JASPAR yes 612467
chr3 14475707 14475718 ESRRA JASPAR yes 70941964
chr3 14475707 14475718 ESRRB JASPAR yes 70941965
chr3 14475716 14475720 LFA1 TRANSFAC yes 612468
chr3 14475716 14475720 LFA1 TRANSFAC yes 70941966
chr3 14475743 14475753 NFATC3 JASPAR yes 612469
chr3 14475743 14475753 NFATC3 JASPAR yes 70941967
chr3 14475769 14475789 RREB1 JASPAR yes 612470
chr3 14475769 14475789 RREB1 JASPAR yes 70941968
chr3 14475799 14475809 NFIA JASPAR yes 612471
chr3 14475799 14475809 NFIA JASPAR yes 70941969
chr3 14475800 14475809 NFIX JASPAR yes 612472
chr3 14475800 14475809 NFIX JASPAR yes 70941970
chr3 14475801 14475807 NFIC JASPAR yes 612473
chr3 14475801 14475807 NFIC JASPAR yes 70941971
chr3 14475801 14475815 TLX1 JASPAR yes 612474
chr3 14475801 14475815 TLX1 JASPAR yes 70941972
chr3 14475802 14475816 TLX1 JASPAR yes 612475
chr3 14475802 14475816 TLX1 JASPAR yes 70941973
chr3 14475813 14475822 THAP1 JASPAR yes 612476
chr3 14475813 14475822 THAP1 JASPAR yes 70941974
chr3 14475840 14475855 RFX5 JASPAR yes 612477
chr3 14475840 14475855 RFX5 JASPAR yes 70941975
chr3 14475845 14475856 CEBPA JASPAR yes 612478
chr3 14475845 14475856 CEBPA JASPAR yes 70941976
chr3 14475846 14475857 CEBPB JASPAR yes 612479
chr3 14475846 14475857 CEBPB JASPAR yes 70941977
chr3 14475870 14475875 SP1 TRANSFAC yes 612480
chr3 14475870 14475875 SP1 TRANSFAC yes 70941978
chr3 14475878 14475884 LEF1 TRANSFAC yes 612481
chr3 14475878 14475884 SOX10 JASPAR yes 612482
chr3 14475878 14475884 LEF1 TRANSFAC yes 70941979
chr3 14475878 14475884 SOX10 JASPAR yes 70941980
chr3 14475881 14475896 FOXP1 JASPAR yes 612483
chr3 14475881 14475896 FOXP1 JASPAR yes 70941981
chr3 14475884 14475895 FOXA1 JASPAR yes 612484
chr3 14475884 14475895 FOXA1 JASPAR yes 70941982
chr3 14475896 14475905 HIC2 JASPAR yes 612485
chr3 14475896 14475905 HIC2 JASPAR yes 70941983
chr3 14475899 14475903 LFA1 TRANSFAC yes 612486
chr3 14475899 14475903 LFA1 TRANSFAC yes 70941984
chr3 14475904 14475908 NFE TRANSFAC yes 612487
chr3 14475904 14475908 NFE TRANSFAC yes 70941985
chr3 14475904 14475915 CDX2 JASPAR yes 612488
chr3 14475904 14475915 CDX2 JASPAR yes 70941986
chr3 14475905 14475916 HOXA10 JASPAR yes 612489
chr3 14475905 14475916 HOXC11 JASPAR yes 612490
chr3 14475905 14475916 HOXA10 JASPAR yes 70941987
chr3 14475905 14475916 HOXC11 JASPAR yes 70941988
chr3 14475906 14475915 CDX1 JASPAR yes 612491
chr3 14475906 14475915 CDX1 JASPAR yes 70941989
chr3 14475906 14475916 HOXC10 JASPAR yes 612492
chr3 14475906 14475916 HOXD11 JASPAR yes 612493
chr3 14475906 14475916 HOXC10 JASPAR yes 70941990
chr3 14475906 14475916 HOXD11 JASPAR yes 70941991
chr3 14475906 14475922 POU4F3 JASPAR yes 612494
chr3 14475906 14475922 POU4F3 JASPAR yes 70941992
chr3 14475908 14475922 POU4F1 JASPAR yes 612495
chr3 14475908 14475922 POU4F1 JASPAR yes 70941993
chr3 14475922 14475926 YY1 TRANSFAC yes 612496
chr3 14475922 14475926 YY1 TRANSFAC yes 70941994
chr3 14475927 14475942 FOXP1 JASPAR yes 612497
chr3 14475927 14475942 FOXP1 JASPAR yes 70941995
chr3 14475936 14475949 SMAD2 JASPAR yes 612498
chr3 14475936 14475949 SMAD2 JASPAR yes 70941996
chr3 14475940 14475944 NFE TRANSFAC yes 612499
chr3 14475940 14475944 NFE TRANSFAC yes 70941997
chr3 14475940 14475945 GATA1 TRANSFAC yes 612500
chr3 14475940 14475945 GATA1 TRANSFAC yes 70941998
chr3 14475940 14475946 GATA3 JASPAR yes 612501
chr3 14475940 14475946 GATA3 JASPAR yes 70941999
chr3 14475956 14475971 ESR2 JASPAR yes 612502
chr3 14475956 14475971 ESR2 JASPAR yes 70942000
chr3 14475957 14475961 ESR1 TRANSFAC yes 612503
chr3 14475957 14475961 ESR1 TRANSFAC yes 70942001
chr3 14475981 14475985 NFE TRANSFAC yes 612504
chr3 14475981 14475985 NFE TRANSFAC yes 70942002
chr3 14475986 14476007 REST JASPAR yes 612505
chr3 14475986 14476007 REST JASPAR yes 70942003
chr3 14476002 14476015 SMAD2 JASPAR yes 612506
chr3 14476002 14476015 SMAD2 JASPAR yes 70942004
chr3 14476027 14476030 MYB TRANSFAC yes 612507
chr3 14476027 14476030 MYB TRANSFAC yes 70942005
chr3 14476039 14476048 NFIX JASPAR yes 612508
chr3 14476039 14476048 NFIX JASPAR yes 70942006
chr3 14476041 14476047 NFIC JASPAR yes 612509
chr3 14476041 14476047 NFIC JASPAR yes 70942007
chr3 14476055 14476070 LEF1 JASPAR yes 612510
chr3 14476055 14476070 LEF1 JASPAR yes 70942008
chr3 14476059 14476065 LEF1 TRANSFAC yes 612511
chr3 14476059 14476065 SOX10 JASPAR yes 612512
chr3 14476059 14476065 LEF1 TRANSFAC yes 70942009
chr3 14476059 14476065 SOX10 JASPAR yes 70942010
chr3 14476067 14476070 MYB TRANSFAC yes 612513
chr3 14476067 14476070 MYB TRANSFAC yes 70942011
chr3 14476074 14476088 NR2F1 JASPAR yes 612514
chr3 14476074 14476088 NR2F1 JASPAR yes 70942012
chr3 14476091 14476101 ETV6 JASPAR yes 612515
chr3 14476091 14476101 ETV6 JASPAR yes 70942013
chr3 14476093 14476098 ETS2 TRANSFAC yes 612516
chr3 14476093 14476098 ETS2 TRANSFAC yes 70942014
chr3 14476098 14476109 NFE2L2 JASPAR yes 612517
chr3 14476098 14476109 NFE2L2 JASPAR yes 70942015
chr3 14476102 14476109 E2F1 TRANSFAC yes 612518
chr3 14476102 14476109 E2F1 TRANSFAC yes 70942016
chr3 14476104 14476119 ESR2 JASPAR yes 612519
chr3 14476104 14476119 ESR2 JASPAR yes 70942017
chr3 14476112 14476123 NFE2L2 JASPAR yes 612520
chr3 14476112 14476123 NFE2L2 JASPAR yes 70942018
chr3 14476112 14476126 RORA JASPAR yes 612521
chr3 14476112 14476126 RORA JASPAR yes 70942019
chr3 14476141 14476151 SP1 JASPAR yes 612522
chr3 14476141 14476151 SP1 JASPAR yes 70942020
chr3 14476176 14476187 NFKB1 JASPAR yes 612523
chr3 14476176 14476187 NFKB1 JASPAR yes 70942021
chr3 14476177 14476181 LFA1 TRANSFAC yes 612524
chr3 14476177 14476181 LFA1 TRANSFAC yes 70942022
SNP sites on vista40059[chr3:14475699-14476221]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 14475865 rs112912516 C T no 6569760
chr3 14475909 rs148513639 C G
CDX1 CDX2 HOXA10 HOXC10 HOXC11 HOXD11 POU4F1 POU4F3
6569761
chr3 14475910 rs930336 A G
CDX1 CDX2 HOXA10 HOXC10 HOXC11 HOXD11 POU4F1 POU4F3
6569762
chr3 14476014 rs144181622 A G
SMAD2 ZKSCAN1
6569763
chr3 14476103 rs569574333 C T
E2F1 NFE2L2 ZKSCAN1
6569764
Genes possibly regulated by vista40059[chr3:14475699-14476221]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 14444076 14530857 + SLC6A6 ENSG00000131389.12 14444076 0.82 1.0 3434 68377
Expression level of Genes
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miRNAs possibly regulated by vista40059[chr3:14475699-14476221]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results