EnhancerDB
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  3. vista40135[chr3:16280641-16280873]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40135[chr3:16280641-16280873]
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Tissue distribution of vista40135
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Transcription factor that possibly regulate vista40135[chr3:16280641-16280873]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16280631 16280641 POU6F2 JASPAR yes 710083
chr3 16280631 16280641 POU6F2 JASPAR yes 70945932
chr3 16280632 16280642 GSX1 JASPAR yes 710084
chr3 16280632 16280642 GSX2 JASPAR yes 710085
chr3 16280632 16280642 GSX1 JASPAR yes 70945933
chr3 16280632 16280642 GSX2 JASPAR yes 70945934
chr3 16280633 16280641 NKX6-1 JASPAR yes 710086
chr3 16280633 16280641 NKX6-2 JASPAR yes 710087
chr3 16280633 16280641 NKX6-1 JASPAR yes 70945935
chr3 16280633 16280641 NKX6-2 JASPAR yes 70945936
chr3 16280633 16280649 POU4F2 JASPAR yes 710088
chr3 16280633 16280649 POU4F3 JASPAR yes 710089
chr3 16280633 16280649 POU4F2 JASPAR yes 70945937
chr3 16280633 16280649 POU4F3 JASPAR yes 70945938
chr3 16280635 16280649 POU4F1 JASPAR yes 710091
chr3 16280635 16280649 POU4F1 JASPAR yes 70945939
chr3 16280672 16280687 STAT1 JASPAR yes 710092
chr3 16280672 16280687 STAT1 JASPAR yes 70945940
chr3 16280674 16280685 STAT1 JASPAR yes 710093
chr3 16280674 16280685 STAT3 JASPAR yes 710094
chr3 16280674 16280685 STAT1 JASPAR yes 70945941
chr3 16280674 16280685 STAT3 JASPAR yes 70945942
chr3 16280676 16280690 PLAG1 JASPAR yes 710095
chr3 16280676 16280690 PLAG1 JASPAR yes 70945943
chr3 16280684 16280698 GLIS2 JASPAR yes 710096
chr3 16280684 16280698 GLIS2 JASPAR yes 70945944
chr3 16280704 16280722 NFYA JASPAR yes 710097
chr3 16280704 16280722 NFYA JASPAR yes 70945945
chr3 16280706 16280710 NFE TRANSFAC yes 710098
chr3 16280706 16280710 NFE TRANSFAC yes 70945946
chr3 16280707 16280723 NFYA JASPAR yes 710099
chr3 16280707 16280723 NFYA JASPAR yes 70945947
chr3 16280710 16280725 NFYB JASPAR yes 710100
chr3 16280710 16280725 NFYB JASPAR yes 70945948
chr3 16280714 16280729 HNF4A JASPAR yes 710101
chr3 16280714 16280729 HNF4A JASPAR yes 70945949
chr3 16280751 16280766 PRDM1 JASPAR yes 710102
chr3 16280751 16280766 PRDM1 JASPAR yes 70945950
chr3 16280755 16280760 ETS2 TRANSFAC yes 710103
chr3 16280755 16280760 ETS2 TRANSFAC yes 70945951
chr3 16280776 16280785 HIC2 JASPAR yes 710104
chr3 16280776 16280785 HIC2 JASPAR yes 70945952
chr3 16280778 16280792 TLX1 JASPAR yes 710105
chr3 16280778 16280792 TLX1 JASPAR yes 70945953
chr3 16280779 16280783 LFA1 TRANSFAC yes 710106
chr3 16280779 16280783 LFA1 TRANSFAC yes 70945954
chr3 16280796 16280817 REST JASPAR yes 710107
chr3 16280796 16280817 REST JASPAR yes 70945955
chr3 16280803 16280809 SOX10 JASPAR yes 710108
chr3 16280803 16280809 SOX10 JASPAR yes 70945956
chr3 16280815 16280829 SPI1 JASPAR yes 710109
chr3 16280815 16280829 SPI1 JASPAR yes 70945957
chr3 16280816 16280829 ELF1 JASPAR yes 710110
chr3 16280816 16280829 ELF1 JASPAR yes 70945958
chr3 16280817 16280829 EHF JASPAR yes 710111
chr3 16280817 16280829 ELF1 JASPAR yes 710112
chr3 16280817 16280829 ELF4 JASPAR yes 710113
chr3 16280817 16280829 EHF JASPAR yes 70945959
chr3 16280817 16280829 ELF1 JASPAR yes 70945960
chr3 16280817 16280829 ELF4 JASPAR yes 70945961
chr3 16280817 16280830 ELF3 JASPAR yes 710114
chr3 16280817 16280830 ELF3 JASPAR yes 70945962
chr3 16280818 16280829 ELF5 JASPAR yes 710115
chr3 16280818 16280829 SPDEF JASPAR yes 710116
chr3 16280818 16280829 ELF5 JASPAR yes 70945963
chr3 16280818 16280829 SPDEF JASPAR yes 70945964
chr3 16280819 16280826 ETS1 TRANSFAC yes 710117
chr3 16280819 16280826 ETS1 TRANSFAC yes 70945965
chr3 16280819 16280829 ETV6 JASPAR yes 710118
chr3 16280819 16280829 GABPA JASPAR yes 710119
chr3 16280819 16280829 ETV6 JASPAR yes 70945966
chr3 16280819 16280829 GABPA JASPAR yes 70945967
chr3 16280819 16280830 ELK4 JASPAR yes 710120
chr3 16280819 16280830 FLI1 JASPAR yes 710121
chr3 16280819 16280830 ELK4 JASPAR yes 70945968
chr3 16280819 16280830 FLI1 JASPAR yes 70945969
chr3 16280820 16280828 EHF JASPAR yes 710122
chr3 16280820 16280828 FEV JASPAR yes 710123
chr3 16280820 16280828 EHF JASPAR yes 70945970
chr3 16280820 16280828 FEV JASPAR yes 70945971
chr3 16280821 16280828 SPI1 JASPAR yes 710124
chr3 16280821 16280828 SPI1 JASPAR yes 70945972
chr3 16280828 16280833 ETS2 TRANSFAC yes 710125
chr3 16280828 16280833 ETS2 TRANSFAC yes 70945973
chr3 16280834 16280840 NFIC JASPAR yes 710126
chr3 16280834 16280840 NFIC JASPAR yes 70945974
chr3 16280844 16280850 YY1 JASPAR yes 710127
chr3 16280844 16280850 YY1 JASPAR yes 70945975
chr3 16280865 16280869 YY1 TRANSFAC yes 710128
chr3 16280865 16280869 YY1 TRANSFAC yes 70945976
SNP sites on vista40135[chr3:16280641-16280873]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16280683 rs842243 A C
PLAG1 STAT1 STAT3
6580028
chr3 16280686 rs114145232 C G
GLIS2 PLAG1 STAT1
6580029
chr3 16280810 rs75728589 G A
REST
6580030
chr3 16280830 rs138443059 G A
ELF3 ELK4 ETS2 FLI1
6580031
chr3 16280863 rs551413326 A G no 6580032
Genes possibly regulated by vista40135[chr3:16280641-16280873]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16216156 16273499 + GALNT15 ENSG00000131386.13 16216156 0.91 1.0 3449 35515
chr3 16299485 16306479 - DPH3 ENSG00000154813.5 16306479 0.71 0.99 3450 74394
chr3 16306706 16391806 + OXNAD1 ENSG00000154814.9 16306706 0.91 0.99 3451 74167
Expression level of Genes
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miRNAs possibly regulated by vista40135[chr3:16280641-16280873]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results