EnhancerDB
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  3. vista40159[chr3:16545937-16546186]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40159[chr3:16545937-16546186]
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Tissue distribution of vista40159
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Transcription factor that possibly regulate vista40159[chr3:16545937-16546186]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16545668 16546032 RUNX3 UCSC Txn Factor no Conserved 108528467
chr3 16545684 16546082 ATF2 UCSC Txn Factor no Conserved 108528468
chr3 16545766 16545994 SPI1 UCSC Txn Factor no Conserved 108528469
chr3 16545924 16545939 JUND JASPAR yes 735501
chr3 16545924 16545939 JUND JASPAR yes 70946846
chr3 16545926 16545940 ATF7 JASPAR yes 735502
chr3 16545926 16545940 BATF3 JASPAR yes 735503
chr3 16545926 16545940 ATF7 JASPAR yes 70946847
chr3 16545926 16545940 BATF3 JASPAR yes 70946848
chr3 16545927 16545939 JDP2 JASPAR yes 735504
chr3 16545927 16545939 JDP2 JASPAR yes 70946849
chr3 16545927 16545940 ATF4 JASPAR yes 735505
chr3 16545927 16545940 ATF4 JASPAR yes 70946850
chr3 16545927 16545942 JUND JASPAR yes 735506
chr3 16545927 16545942 JUND JASPAR yes 70946851
chr3 16545928 16545941 JUN JASPAR yes 735507
chr3 16545928 16545941 JUN JASPAR yes 70946852
chr3 16545954 16545958 NFE TRANSFAC yes 735509
chr3 16545954 16545958 NFE TRANSFAC yes 70946853
chr3 16545954 16545967 ZBTB18 JASPAR yes 735510
chr3 16545954 16545967 ZBTB18 JASPAR yes 70946854
chr3 16545960 16545972 FOXC2 JASPAR yes 735511
chr3 16545960 16545972 FOXC2 JASPAR yes 70946855
chr3 16545961 16545972 FOXB1 JASPAR yes 735512
chr3 16545961 16545972 FOXC1 JASPAR yes 735513
chr3 16545961 16545972 FOXB1 JASPAR yes 70946856
chr3 16545961 16545972 FOXC1 JASPAR yes 70946857
chr3 16545972 16545981 NKX2-8 JASPAR yes 735514
chr3 16545972 16545981 NKX2-8 JASPAR yes 70946858
chr3 16545975 16545990 TFAP2A JASPAR yes 735515
chr3 16545975 16545990 TFAP2A JASPAR yes 70946859
chr3 16545978 16545989 TFAP2A JASPAR yes 735516
chr3 16545978 16545989 TFAP2B JASPAR yes 735517
chr3 16545978 16545989 TFAP2C JASPAR yes 735518
chr3 16545978 16545989 TFAP2A JASPAR yes 70946860
chr3 16545978 16545989 TFAP2B JASPAR yes 70946861
chr3 16545978 16545989 TFAP2C JASPAR yes 70946862
chr3 16546002 16546007 GATA1 TRANSFAC yes 735519
chr3 16546002 16546007 GATA1 TRANSFAC yes 70946863
chr3 16546006 16546019 ZBTB18 JASPAR yes 735520
chr3 16546006 16546019 ZBTB18 JASPAR yes 70946864
chr3 16546007 16546019 PKNOX1 JASPAR yes 735521
chr3 16546007 16546019 PKNOX2 JASPAR yes 735522
chr3 16546007 16546019 TGIF1 JASPAR yes 735523
chr3 16546007 16546019 TGIF2 JASPAR yes 735524
chr3 16546007 16546019 PKNOX1 JASPAR yes 70946865
chr3 16546007 16546019 PKNOX2 JASPAR yes 70946866
chr3 16546007 16546019 TGIF1 JASPAR yes 70946867
chr3 16546007 16546019 TGIF2 JASPAR yes 70946868
chr3 16546008 16546018 MYF6 JASPAR yes 735525
chr3 16546008 16546018 NEUROG2 JASPAR yes 735526
chr3 16546008 16546018 MYF6 JASPAR yes 70946869
chr3 16546008 16546018 NEUROG2 JASPAR yes 70946870
chr3 16546008 16546020 TAL1 JASPAR yes 735527
chr3 16546008 16546020 TAL1 JASPAR yes 70946871
chr3 16546017 16546024 NKX3-1 JASPAR yes 735528
chr3 16546017 16546024 NKX3-1 JASPAR yes 70946872
chr3 16546029 16546033 YY1 TRANSFAC yes 735529
chr3 16546029 16546033 YY1 TRANSFAC yes 70946873
chr3 16546051 16546056 GATA2 JASPAR yes 735530
chr3 16546051 16546056 GATA2 JASPAR yes 70946874
chr3 16546059 16546074 AR JASPAR yes 735531
chr3 16546059 16546074 AR JASPAR yes 70946875
chr3 16546072 16546078 TCF4 TRANSFAC yes 735532
chr3 16546072 16546078 TCF4 TRANSFAC yes 70946876
chr3 16546087 16546096 RUNX2 JASPAR yes 735533
chr3 16546087 16546096 RUNX2 JASPAR yes 70946877
chr3 16546092 16546097 GATA1 TRANSFAC yes 735534
chr3 16546092 16546097 GATA1 TRANSFAC yes 70946878
chr3 16546111 16546123 ZBTB7A JASPAR yes 735535
chr3 16546111 16546123 ZBTB7A JASPAR yes 70946879
chr3 16546112 16546124 ZBTB7B JASPAR yes 735536
chr3 16546112 16546124 ZBTB7C JASPAR yes 735537
chr3 16546112 16546124 ZBTB7B JASPAR yes 70946880
chr3 16546112 16546124 ZBTB7C JASPAR yes 70946881
chr3 16546119 16546123 H1TF2 TRANSFAC yes 735538
chr3 16546119 16546123 NFE TRANSFAC yes 735539
chr3 16546119 16546123 SRF TRANSFAC yes 735540
chr3 16546119 16546123 H1TF2 TRANSFAC yes 70946882
chr3 16546119 16546123 NFE TRANSFAC yes 70946883
chr3 16546119 16546123 SRF TRANSFAC yes 70946884
chr3 16546121 16546129 FOXL1 JASPAR yes 735541
chr3 16546121 16546129 FOXL1 JASPAR yes 70946885
chr3 16546151 16546158 NKX3-1 JASPAR yes 735542
chr3 16546151 16546158 NKX3-1 JASPAR yes 70946886
SNP sites on vista40159[chr3:16545937-16546186]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16545948 rs147421260 T A
ATF2 RUNX3 SPI1
6582425
chr3 16545950 rs117577155 T C
ATF2 RUNX3 SPI1
6582426
chr3 16545971 rs112223524 T C
ATF2 FOXB1 FOXC1 FOXC2 RUNX3 SPI1
6582427
chr3 16546000 rs148483083 G A
ATF2 RUNX3
6582428
chr3 16546086 rs9990208 C T no 6582429
Genes possibly regulated by vista40159[chr3:16545937-16546186]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 3452 90653
Expression level of Genes
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miRNAs possibly regulated by vista40159[chr3:16545937-16546186]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results