EnhancerDB
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  3. vista40869[chr3:49123301-49123671]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40869[chr3:49123301-49123671]
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Tissue distribution of vista40869
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Transcription factor that possibly regulate vista40869[chr3:49123301-49123671]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 49123301 49123312 HOXA10 JASPAR yes 70979517
chr3 49123302 49123311 CDX1 JASPAR yes 70979518
chr3 49123305 49123320 PRDM1 JASPAR yes 70979519
chr3 49123311 49123317 HiNF-A TRANSFAC yes 70979520
chr3 49123320 49123333 HSF1 JASPAR yes 70979521
chr3 49123320 49123333 HSF4 JASPAR yes 70979522
chr3 49123346 49123356 ALX3 JASPAR yes 70979523
chr3 49123346 49123356 EMX1 JASPAR yes 70979524
chr3 49123346 49123356 EMX2 JASPAR yes 70979525
chr3 49123346 49123356 EN2 JASPAR yes 70979526
chr3 49123346 49123356 ESX1 JASPAR yes 70979527
chr3 49123346 49123356 EVX1 JASPAR yes 70979528
chr3 49123346 49123356 EVX2 JASPAR yes 70979529
chr3 49123346 49123356 GBX1 JASPAR yes 70979530
chr3 49123346 49123356 GBX2 JASPAR yes 70979531
chr3 49123346 49123356 GSX1 JASPAR yes 70979532
chr3 49123346 49123356 GSX2 JASPAR yes 70979533
chr3 49123346 49123356 HESX1 JASPAR yes 70979534
chr3 49123346 49123356 HOXA2 JASPAR yes 70979535
chr3 49123346 49123356 HOXB2 JASPAR yes 70979536
chr3 49123346 49123356 HOXB3 JASPAR yes 70979537
chr3 49123346 49123356 LBX2 JASPAR yes 70979538
chr3 49123346 49123356 LHX2 JASPAR yes 70979539
chr3 49123346 49123356 LHX6 JASPAR yes 70979540
chr3 49123346 49123356 MEOX1 JASPAR yes 70979541
chr3 49123346 49123356 MEOX2 JASPAR yes 70979542
chr3 49123346 49123356 MIXL1 JASPAR yes 70979543
chr3 49123346 49123356 MNX1 JASPAR yes 70979544
chr3 49123346 49123356 NOTO JASPAR yes 70979545
chr3 49123346 49123356 POU6F1 JASPAR yes 70979546
chr3 49123346 49123356 RAX JASPAR yes 70979547
chr3 49123347 49123355 BSX JASPAR yes 70979548
chr3 49123347 49123355 DLX6 JASPAR yes 70979549
chr3 49123347 49123355 EN1 JASPAR yes 70979550
chr3 49123347 49123355 ISX JASPAR yes 70979551
chr3 49123347 49123355 LBX1 JASPAR yes 70979552
chr3 49123347 49123355 LHX9 JASPAR yes 70979553
chr3 49123347 49123355 LMX1A JASPAR yes 70979554
chr3 49123347 49123355 LMX1B JASPAR yes 70979555
chr3 49123347 49123355 NKX6-1 JASPAR yes 70979556
chr3 49123347 49123355 NKX6-2 JASPAR yes 70979557
chr3 49123347 49123355 PAX4 JASPAR yes 70979558
chr3 49123347 49123355 PDX1 JASPAR yes 70979559
chr3 49123347 49123355 PRRX1 JASPAR yes 70979560
chr3 49123347 49123355 RAX2 JASPAR yes 70979561
chr3 49123347 49123355 SHOX JASPAR yes 70979562
chr3 49123347 49123355 UNCX JASPAR yes 70979563
chr3 49123347 49123355 VAX1 JASPAR yes 70979564
chr3 49123347 49123355 VAX2 JASPAR yes 70979565
chr3 49123347 49123355 VSX1 JASPAR yes 70979566
chr3 49123347 49123355 VSX2 JASPAR yes 70979567
chr3 49123347 49123357 POU6F2 JASPAR yes 70979568
chr3 49123378 49123389 CDX2 JASPAR yes 70979569
chr3 49123379 49123390 HOXA10 JASPAR yes 70979570
chr3 49123380 49123389 CDX1 JASPAR yes 70979571
chr3 49123380 49123390 HOXA13 JASPAR yes 70979572
chr3 49123384 49123395 PHOX2A JASPAR yes 70979573
chr3 49123384 49123395 PROP1 JASPAR yes 70979574
chr3 49123388 49123399 PROP1 JASPAR yes 70979575
chr3 49123389 49123399 PAX3 JASPAR yes 70979576
chr3 49123389 49123399 PAX7 JASPAR yes 70979577
chr3 49123391 49123401 ALX3 JASPAR yes 70979578
chr3 49123391 49123401 GSX1 JASPAR yes 70979579
chr3 49123391 49123401 GSX2 JASPAR yes 70979580
chr3 49123391 49123401 LHX6 JASPAR yes 70979581
chr3 49123391 49123401 MIXL1 JASPAR yes 70979582
chr3 49123391 49123401 MNX1 JASPAR yes 70979583
chr3 49123391 49123401 NOTO JASPAR yes 70979584
chr3 49123391 49123401 POU6F1 JASPAR yes 70979585
chr3 49123391 49123401 RAX JASPAR yes 70979586
chr3 49123392 49123400 ISX JASPAR yes 70979587
chr3 49123392 49123400 LMX1A JASPAR yes 70979588
chr3 49123392 49123400 LMX1B JASPAR yes 70979589
chr3 49123392 49123400 NKX6-1 JASPAR yes 70979590
chr3 49123392 49123400 NKX6-2 JASPAR yes 70979591
chr3 49123392 49123400 PRRX1 JASPAR yes 70979592
chr3 49123392 49123400 RAX2 JASPAR yes 70979593
chr3 49123392 49123400 SHOX JASPAR yes 70979594
chr3 49123392 49123400 UNCX JASPAR yes 70979595
chr3 49123392 49123400 VAX1 JASPAR yes 70979596
chr3 49123402 49123406 YY1 TRANSFAC yes 70979597
chr3 49123428 49123433 GATA2 JASPAR yes 70979598
chr3 49123431 49123446 AR JASPAR yes 70979599
chr3 49123444 49123448 H1TF2 TRANSFAC yes 70979600
chr3 49123444 49123448 NFE TRANSFAC yes 70979601
chr3 49123444 49123448 SRF TRANSFAC yes 70979602
chr3 49123471 49123486 FOXP1 JASPAR yes 70979603
chr3 49123472 49123493 IRF1 JASPAR yes 70979604
chr3 49123476 49123490 STAT1 JASPAR yes 70979605
chr3 49123515 49123526 FOXA1 JASPAR yes 70979606
chr3 49123515 49123530 FOXA1 JASPAR yes 70979607
chr3 49123516 49123527 FOXB1 JASPAR yes 70979608
chr3 49123516 49123527 FOXC1 JASPAR yes 70979609
chr3 49123516 49123528 FOXC2 JASPAR yes 70979610
chr3 49123517 49123528 FOXP2 JASPAR yes 70979611
chr3 49123518 49123526 FOXO3 JASPAR yes 70979612
chr3 49123519 49123526 FOXD2 JASPAR yes 70979613
chr3 49123519 49123526 FOXI1 JASPAR yes 70979614
chr3 49123519 49123526 FOXL1 JASPAR yes 70979615
chr3 49123519 49123526 FOXO4 JASPAR yes 70979616
chr3 49123519 49123526 FOXO6 JASPAR yes 70979617
chr3 49123519 49123526 FOXP3 JASPAR yes 70979618
chr3 49123519 49123527 FOXD1 JASPAR yes 70979619
chr3 49123519 49123527 FOXG1 JASPAR yes 70979620
chr3 49123519 49123527 FOXO3 JASPAR yes 70979621
chr3 49123528 49123532 YY1 TRANSFAC yes 70979622
chr3 49123544 49123559 MEF2C JASPAR yes 70979623
chr3 49123545 49123560 MEF2A JASPAR yes 70979624
chr3 49123546 49123558 MEF2A JASPAR yes 70979625
chr3 49123546 49123558 MEF2B JASPAR yes 70979626
chr3 49123546 49123558 MEF2D JASPAR yes 70979627
chr3 49123547 49123557 MEF2A JASPAR yes 70979628
chr3 49123559 49123574 FOXP1 JASPAR yes 70979629
chr3 49123561 49123571 HOXD11 JASPAR yes 70979630
chr3 49123564 49123579 FOXP1 JASPAR yes 70979631
chr3 49123565 49123571 TBP TRANSFAC yes 70979632
chr3 49123565 49123580 FOXP1 JASPAR yes 70979633
chr3 49123573 49123588 HNF1A JASPAR yes 70979634
chr3 49123579 49123586 NKX3-1 JASPAR yes 70979635
chr3 49123583 49123586 MYB TRANSFAC yes 70979636
chr3 49123583 49123594 CDX2 JASPAR yes 70979637
chr3 49123591 49123596 ETS2 TRANSFAC yes 70979638
chr3 49123593 49123603 RELA JASPAR yes 70979639
chr3 49123617 49123633 SOX8 JASPAR yes 70979640
chr3 49123626 49123630 YY1 TRANSFAC yes 70979641
chr3 49123638 49123642 TEAD2 TRANSFAC yes 70979642
chr3 49123638 49123643 TBP TRANSFAC yes 70979643
chr3 49123638 49123644 TFIID TRANSFAC yes 70979644
chr3 49123640 49123655 SOX21 JASPAR yes 70979645
chr3 49123640 49123656 SOX4 JASPAR yes 70979646
chr3 49123642 49123653 PROP1 JASPAR yes 70979647
chr3 49123649 49123658 SRY JASPAR yes 70979648
chr3 49123660 49123665 GATA1 TRANSFAC yes 70979649
SNP sites on vista40869[chr3:49123301-49123671]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 49123312 rs142718469 A G
HOXA10 HiNF-A PRDM1
6724521
chr3 49123336 rs529870142 G A no 6724522
chr3 49123637 rs115850034 G A no 6724523
Genes possibly regulated by vista40869[chr3:49123301-49123671]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 49027319 49044587 + P4HTM ENSG00000178467.13 49027319 0.7 1.0 3655 4018
chr3 49044495 49053386 + WDR6 ENSG00000178252.13 49044495 0.73 1.0 3656 21194
chr3 49052921 49059726 - DALRD3 ENSG00000178149.12 49059726 0.74 1.0 3657 36425
chr3 49057892 49060928 + NDUFAF3 ENSG00000178057.10 49057892 0.7 1.0 3658 34591
chr3 49061758 49066841 - IMPDH2 ENSG00000178035.7 49066841 0.81 1.0 3659 43540
chr3 49067140 49131796 - QRICH1 ENSG00000198218.6 49131796 0.56 1.0 3660 91875
chr3 49133365 49142553 - QARS ENSG00000172053.10 49142553 0.66 1.0 3661 81118
chr3 49145479 49158371 - USP19 ENSG00000172046.14 49158371 0.79 1.0 3662 65300
chr3 49158547 49170551 - LAMB2 ENSG00000172037.9 49170551 0.65 1.0 3663 53120
chr3 49199968 49203754 - CCDC71 ENSG00000177352.9 49203754 0.61 1.0 3664 19917
chr3 49209044 49213917 + KLHDC8B ENSG00000185909.10 49209044 0.84 0.99 3665 14627
Expression level of Genes
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miRNAs possibly regulated by vista40869[chr3:49123301-49123671]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results