EnhancerDB
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  3. vista40873[chr3:49275888-49276379]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40873[chr3:49275888-49276379]
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Tissue distribution of vista40873
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Transcription factor that possibly regulate vista40873[chr3:49275888-49276379]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 49275683 49276293 EP300 UCSC Txn Factor no Conserved 108529143
chr3 49275790 49276458 TEAD4 UCSC Txn Factor no Conserved 108529144
chr3 49275893 49276223 BHLHE40 UCSC Txn Factor no Conserved 108529145
chr3 49275906 49276202 CEBPB UCSC Txn Factor no Conserved 108529146
chr3 49275916 49276464 GATA1 UCSC Txn Factor no Conserved 108529147
chr3 49275983 49276211 NR2F2 UCSC Txn Factor no Conserved 108529148
chr3 49275987 49276246 TAL1 UCSC Txn Factor no Conserved 108529149
chr3 49275990 49276230 PML UCSC Txn Factor no Conserved 108529150
chr3 49275924 49275928 YY1 TRANSFAC yes 2278411
chr3 49275924 49275928 YY1 TRANSFAC yes 70979735
chr3 49275930 49275948 NFYA JASPAR yes 2278412
chr3 49275930 49275948 NFYA JASPAR yes 70979736
chr3 49275933 49275949 NFYA JASPAR yes 2278413
chr3 49275933 49275949 NFYA JASPAR yes 70979737
chr3 49275936 49275951 NFYB JASPAR yes 2278414
chr3 49275936 49275951 NFYB JASPAR yes 70979738
chr3 49275938 49275943 NFY TRANSFAC yes 2278415
chr3 49275938 49275943 NFY TRANSFAC yes 70979739
chr3 49275998 49276007 HIC2 JASPAR yes 2278416
chr3 49275998 49276007 HIC2 JASPAR yes 70979740
chr3 49276001 49276005 LFA1 TRANSFAC yes 2278417
chr3 49276001 49276005 LFA1 TRANSFAC yes 70979741
chr3 49276013 49276027 TCF7L2 JASPAR yes 2278418
chr3 49276013 49276027 TCF7L2 JASPAR yes 70979742
chr3 49276018 49276024 SOX10 JASPAR yes 2278419
chr3 49276018 49276024 SOX10 JASPAR yes 70979743
chr3 49276031 49276043 HNF1B JASPAR yes 2278420
chr3 49276031 49276043 HNF1B JASPAR yes 70979744
chr3 49276034 49276050 SOX4 JASPAR yes 2278421
chr3 49276034 49276050 SOX4 JASPAR yes 70979745
chr3 49276039 49276047 MEIS3 JASPAR yes 2278422
chr3 49276039 49276047 MEIS3 JASPAR yes 70979746
chr3 49276040 49276052 PKNOX1 JASPAR yes 2278423
chr3 49276040 49276052 PKNOX2 JASPAR yes 2278424
chr3 49276040 49276052 TGIF1 JASPAR yes 2278425
chr3 49276040 49276052 TGIF2 JASPAR yes 2278426
chr3 49276040 49276052 PKNOX1 JASPAR yes 70979747
chr3 49276040 49276052 PKNOX2 JASPAR yes 70979748
chr3 49276040 49276052 TGIF1 JASPAR yes 70979749
chr3 49276040 49276052 TGIF2 JASPAR yes 70979750
chr3 49276040 49276058 IRF2 JASPAR yes 2278427
chr3 49276040 49276058 IRF2 JASPAR yes 70979751
chr3 49276045 49276056 CEBPB JASPAR yes 2278428
chr3 49276045 49276056 CEBPB JASPAR yes 70979752
chr3 49276045 49276057 HLF JASPAR yes 2278429
chr3 49276045 49276057 HLF JASPAR yes 70979753
chr3 49276045 49276058 ATF4 JASPAR yes 2278430
chr3 49276045 49276058 ATF4 JASPAR yes 70979754
chr3 49276046 49276057 CEBPA JASPAR yes 2278431
chr3 49276046 49276057 CEBPA JASPAR yes 70979755
chr3 49276046 49276059 JUN JASPAR yes 2278432
chr3 49276046 49276059 JUN JASPAR yes 70979756
chr3 49276066 49276079 NR2F1 JASPAR yes 2278433
chr3 49276066 49276079 NR2F1 JASPAR yes 70979757
chr3 49276069 49276077 NR4A2 JASPAR yes 2278434
chr3 49276069 49276077 NR4A2 JASPAR yes 70979758
chr3 49276075 49276087 NHLH1 JASPAR yes 2278435
chr3 49276075 49276087 NHLH1 JASPAR yes 70979759
chr3 49276076 49276086 NHLH1 JASPAR yes 2278436
chr3 49276076 49276086 NHLH1 JASPAR yes 70979760
chr3 49276088 49276103 FOXP1 JASPAR yes 2278437
chr3 49276088 49276103 FOXP1 JASPAR yes 70979761
chr3 49276089 49276110 IRF1 JASPAR yes 2278438
chr3 49276089 49276110 IRF1 JASPAR yes 70979762
chr3 49276090 49276095 ETS2 TRANSFAC yes 2278439
chr3 49276090 49276095 ETS2 TRANSFAC yes 70979763
chr3 49276091 49276102 FOXP2 JASPAR yes 2278440
chr3 49276091 49276102 FOXP2 JASPAR yes 70979764
chr3 49276092 49276100 FOXO3 JASPAR yes 2278441
chr3 49276092 49276100 FOXO3 JASPAR yes 70979765
chr3 49276093 49276107 SPI1 JASPAR yes 2278442
chr3 49276093 49276107 SPI1 JASPAR yes 70979766
chr3 49276093 49276108 STAT2 JASPAR yes 2278443
chr3 49276093 49276108 STAT2 JASPAR yes 70979767
chr3 49276131 49276149 NR3C1 JASPAR yes 2278444
chr3 49276131 49276149 NR3C1 JASPAR yes 70979768
chr3 49276157 49276170 NR2F1 JASPAR yes 2278445
chr3 49276157 49276170 NR2F1 JASPAR yes 70979769
chr3 49276159 49276170 ESRRA JASPAR yes 2278446
chr3 49276159 49276170 ESRRB JASPAR yes 2278447
chr3 49276159 49276170 ESRRA JASPAR yes 70979770
chr3 49276159 49276170 ESRRB JASPAR yes 70979771
chr3 49276160 49276168 NR4A2 JASPAR yes 2278448
chr3 49276160 49276168 NR4A2 JASPAR yes 70979772
chr3 49276161 49276171 RORA JASPAR yes 2278449
chr3 49276161 49276171 RORA JASPAR yes 70979773
chr3 49276179 49276193 STAT1 JASPAR yes 2278450
chr3 49276179 49276193 STAT1 JASPAR yes 70979774
chr3 49276181 49276202 IRF1 JASPAR yes 2278451
chr3 49276181 49276202 IRF1 JASPAR yes 70979775
chr3 49276185 49276199 SPI1 JASPAR yes 2278452
chr3 49276185 49276199 SPI1 JASPAR yes 70979776
chr3 49276194 49276205 HOXC12 JASPAR yes 2278453
chr3 49276194 49276205 HOXC12 JASPAR yes 70979777
chr3 49276195 49276205 HOXD11 JASPAR yes 2278454
chr3 49276195 49276205 HOXD11 JASPAR yes 70979778
chr3 49276212 49276223 ESRRB JASPAR yes 2278455
chr3 49276212 49276223 ESRRB JASPAR yes 70979779
chr3 49276214 49276217 MYB TRANSFAC yes 2278456
chr3 49276214 49276217 MYB TRANSFAC yes 70979780
chr3 49276214 49276222 SF1 TRANSFAC yes 2278457
chr3 49276214 49276222 SF1 TRANSFAC yes 70979781
chr3 49276231 49276236 ETS2 TRANSFAC yes 2278458
chr3 49276231 49276236 ETS2 TRANSFAC yes 70979782
chr3 49276231 49276239 EHF JASPAR yes 2278459
chr3 49276231 49276239 EHF JASPAR yes 70979783
chr3 49276234 49276255 ZNF263 JASPAR yes 2278460
chr3 49276234 49276255 ZNF263 JASPAR yes 70979784
chr3 49276235 49276245 GSC JASPAR yes 2278461
chr3 49276235 49276245 GSC JASPAR yes 70979785
chr3 49276236 49276244 OTX2 JASPAR yes 2278462
chr3 49276236 49276244 OTX2 JASPAR yes 70979786
chr3 49276238 49276252 TCF7L2 JASPAR yes 2278463
chr3 49276238 49276252 TCF7L2 JASPAR yes 70979787
chr3 49276247 49276257 SP1 JASPAR yes 2278464
chr3 49276247 49276257 SP1 JASPAR yes 70979788
chr3 49276247 49276268 ZNF263 JASPAR yes 2278465
chr3 49276247 49276268 ZNF263 JASPAR yes 70979789
chr3 49276248 49276258 SP1 JASPAR yes 2278466
chr3 49276248 49276258 SP1 JASPAR yes 70979790
chr3 49276249 49276255 MAZ TRANSFAC yes 2278467
chr3 49276249 49276255 MAZ TRANSFAC yes 70979791
chr3 49276250 49276260 MZF1 JASPAR yes 2278468
chr3 49276250 49276260 MZF1 JASPAR yes 70979792
chr3 49276250 49276271 ZNF263 JASPAR yes 2278469
chr3 49276250 49276271 ZNF263 JASPAR yes 70979793
chr3 49276253 49276274 ZNF263 JASPAR yes 2278470
chr3 49276253 49276274 ZNF263 JASPAR yes 70979794
chr3 49276254 49276275 ZNF263 JASPAR yes 2278471
chr3 49276254 49276275 ZNF263 JASPAR yes 70979795
chr3 49276255 49276260 ETS2 TRANSFAC yes 2278472
chr3 49276255 49276260 ETS2 TRANSFAC yes 70979796
chr3 49276282 49276293 E2F6 JASPAR yes 2278473
chr3 49276282 49276293 E2F6 JASPAR yes 70979797
chr3 49276298 49276319 ZNF263 JASPAR yes 2278474
chr3 49276298 49276319 ZNF263 JASPAR yes 70979798
chr3 49276327 49276337 TEAD1 JASPAR yes 2278475
chr3 49276327 49276337 TEAD4 JASPAR yes 2278476
chr3 49276327 49276337 TEAD1 JASPAR yes 70979799
chr3 49276327 49276337 TEAD4 JASPAR yes 70979800
chr3 49276328 49276336 TEAD3 JASPAR yes 2278477
chr3 49276328 49276336 TEAD3 JASPAR yes 70979801
chr3 49276329 49276344 TFAP2A JASPAR yes 2278478
chr3 49276329 49276344 TFAP2C JASPAR yes 2278479
chr3 49276329 49276344 TFAP2A JASPAR yes 70979802
chr3 49276329 49276344 TFAP2C JASPAR yes 70979803
chr3 49276331 49276336 ETS2 TRANSFAC yes 2278480
chr3 49276331 49276336 ETS2 TRANSFAC yes 70979804
SNP sites on vista40873[chr3:49275888-49276379]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 49275923 rs11920207 C T
BHLHE40 CEBPB EP300 GATA1 TEAD4
6724802
chr3 49275964 rs11920267 G A
BHLHE40 CEBPB EP300 GATA1 TEAD4
6724803
chr3 49276038 rs532187591 C T
BHLHE40 CEBPB EP300 GATA1 HNF1B NR2F2 PML SOX4 TAL1 TEAD4
6724804
chr3 49276077 rs10154992 C T
BHLHE40 CEBPB EP300 GATA1 NHLH1 NR2F1 NR2F2 NR4A2 PML TAL1 TEAD4
6724805
chr3 49276196 rs114507891 A G
BHLHE40 CEBPB EP300 GATA1 HOXC12 HOXD11 IRF1 NR2F2 PML SPI1 TAL1 TEAD4
6724806
Genes possibly regulated by vista40873[chr3:49275888-49276379]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 49199968 49203754 - CCDC71 ENSG00000177352.9 49203754 0.61 1.0 3664 27866
chr3 49209044 49213917 + KLHDC8B ENSG00000185909.10 49209044 0.84 0.99 3665 33156
chr3 49215065 49229291 - C3orf84 ENSG00000236980.5 49229291 0.0 0.0 3666 53403
chr3 49235861 49295537 + CCDC36 ENSG00000173421.12 49235861 0.86 0.92 3667 59973
chr3 49297518 49298744 + RP11-3B7.1 ENSG00000225399.3 49297518 0.89 0.0 3668 78861
chr3 49306035 49315342 - C3orf62 ENSG00000188315.3 49315342 0.67 0.99 3669 61037
Expression level of Genes
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miRNAs possibly regulated by vista40873[chr3:49275888-49276379]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results