EnhancerDB
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  3. vista40877[chr3:49382516-49382833]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40877[chr3:49382516-49382833]
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Tissue distribution of vista40877
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Transcription factor that possibly regulate vista40877[chr3:49382516-49382833]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 49382388 49383043 POLR2A UCSC Txn Factor no Conserved 108529151
chr3 49382486 49382880 NFIC UCSC Txn Factor no Conserved 108529152
chr3 49382520 49382820 SPI1 UCSC Txn Factor no Conserved 108529153
chr3 49382543 49382823 RUNX3 UCSC Txn Factor no Conserved 108529154
chr3 49382615 49382810 FOS UCSC Txn Factor no Conserved 108529155
chr3 49382514 49382528 RORA JASPAR yes 2282500
chr3 49382514 49382528 RORA JASPAR yes 70980021
chr3 49382527 49382535 TBX15 JASPAR yes 2282501
chr3 49382527 49382535 TBX15 JASPAR yes 70980022
chr3 49382527 49382538 E2F6 JASPAR yes 2282502
chr3 49382527 49382538 E2F6 JASPAR yes 70980023
chr3 49382528 49382533 SP1 TRANSFAC yes 2282503
chr3 49382528 49382533 SP1 TRANSFAC yes 70980024
chr3 49382610 49382621 NFE2L2 JASPAR yes 2282504
chr3 49382610 49382621 NFE2L2 JASPAR yes 70980025
chr3 49382626 49382630 NFE TRANSFAC yes 2282505
chr3 49382626 49382630 NFE TRANSFAC yes 70980026
chr3 49382628 49382643 MEF2C JASPAR yes 2282506
chr3 49382628 49382643 MEF2C JASPAR yes 70980027
chr3 49382628 49382649 IRF1 JASPAR yes 2282507
chr3 49382628 49382649 IRF1 JASPAR yes 70980028
chr3 49382629 49382644 MEF2A JASPAR yes 2282508
chr3 49382629 49382644 MEF2A JASPAR yes 70980029
chr3 49382631 49382645 IRF7 JASPAR yes 2282509
chr3 49382631 49382645 IRF7 JASPAR yes 70980030
chr3 49382632 49382647 STAT2 JASPAR yes 2282510
chr3 49382632 49382647 STAT2 JASPAR yes 70980031
chr3 49382633 49382645 IRF1 JASPAR yes 2282511
chr3 49382633 49382645 IRF1 JASPAR yes 70980032
chr3 49382634 49382655 IRF1 JASPAR yes 2282512
chr3 49382634 49382655 IRF1 JASPAR yes 70980033
chr3 49382636 49382650 IRF7 JASPAR yes 2282513
chr3 49382636 49382650 IRF7 JASPAR yes 70980034
chr3 49382640 49382661 IRF1 JASPAR yes 2282514
chr3 49382640 49382661 IRF1 JASPAR yes 70980035
chr3 49382644 49382658 SPI1 JASPAR yes 2282515
chr3 49382644 49382658 SPI1 JASPAR yes 70980036
chr3 49382646 49382667 IRF1 JASPAR yes 2282516
chr3 49382646 49382667 IRF1 JASPAR yes 70980037
chr3 49382651 49382665 STAT1 JASPAR yes 2282517
chr3 49382651 49382665 STAT1 JASPAR yes 70980038
chr3 49382656 49382664 FOXO3 JASPAR yes 2282518
chr3 49382656 49382664 FOXO3 JASPAR yes 70980039
chr3 49382657 49382666 SRY JASPAR yes 2282519
chr3 49382657 49382666 SRY JASPAR yes 70980040
chr3 49382659 49382668 SOX9 JASPAR yes 2282520
chr3 49382659 49382668 SOX9 JASPAR yes 70980041
chr3 49382665 49382677 TAL1 JASPAR yes 2282521
chr3 49382665 49382677 TAL1 JASPAR yes 70980042
chr3 49382666 49382679 ZBTB18 JASPAR yes 2282522
chr3 49382666 49382679 ZBTB18 JASPAR yes 70980043
chr3 49382667 49382677 NEUROG2 JASPAR yes 2282523
chr3 49382667 49382677 NEUROG2 JASPAR yes 70980044
chr3 49382713 49382719 PEA3 TRANSFAC yes 2282524
chr3 49382713 49382719 PEA3 TRANSFAC yes 70980045
chr3 49382713 49382724 FLI1 JASPAR yes 2282525
chr3 49382713 49382724 FLI1 JASPAR yes 70980046
chr3 49382714 49382722 FEV JASPAR yes 2282526
chr3 49382714 49382722 FEV JASPAR yes 70980047
chr3 49382734 49382745 BATF JASPAR yes 2282527
chr3 49382734 49382745 BATF JASPAR yes 70980048
chr3 49382752 49382762 NFIA JASPAR yes 2282528
chr3 49382752 49382762 NFIA JASPAR yes 70980049
chr3 49382753 49382762 NFIX JASPAR yes 2282529
chr3 49382753 49382762 NFIX JASPAR yes 70980050
chr3 49382754 49382760 NFIC JASPAR yes 2282530
chr3 49382754 49382760 NFIC JASPAR yes 70980051
chr3 49382778 49382792 RORA JASPAR yes 2282531
chr3 49382778 49382792 RORA JASPAR yes 70980052
chr3 49382789 49382794 GATA2 JASPAR yes 2282532
chr3 49382789 49382794 GATA2 JASPAR yes 70980053
SNP sites on vista40877[chr3:49382516-49382833]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 49382612 rs570825711 T C
NFE2L2 NFIC POLR2A RUNX3 SPI1
6725154
chr3 49382614 rs113239747 A G
NFE2L2 NFIC POLR2A RUNX3 SPI1
6725155
chr3 49382621 rs553154132 A G
FOS NFE2L2 NFIC POLR2A RUNX3 SPI1
6725156
chr3 49382681 rs78075599 G A,T
FOS NFIC POLR2A RUNX3 SPI1
6725157
chr3 49382812 rs143409361 C T
NFIC POLR2A RUNX3 SPI1
6725158
Genes possibly regulated by vista40877[chr3:49382516-49382833]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 49297518 49298744 + RP11-3B7.1 ENSG00000225399.3 49297518 0.89 0.0 3668 15002
chr3 49306035 49315342 - C3orf62 ENSG00000188315.3 49315342 0.67 0.99 3669 32826
chr3 49315264 49378145 - USP4 ENSG00000114316.8 49378145 0.67 1.0 3670 95629
chr3 49394609 49396033 - GPX1 ENSG00000233276.2 49396033 0.77 1.0 3671 86800
chr3 49396578 49450431 - RHOA ENSG00000067560.6 49450431 0.61 1.0 3672 32402
chr3 49449639 49453908 + TCTA ENSG00000145022.4 49449639 0.73 0.99 3673 33194
chr3 49454211 49460186 - AMT ENSG00000145020.10 49460186 0.69 1.0 3674 22647
chr3 49460379 49466759 - NICN1 ENSG00000145029.7 49466759 0.66 1.0 3675 16074
Expression level of Genes
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miRNAs possibly regulated by vista40877[chr3:49382516-49382833]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results