EnhancerDB
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  3. vista40879[chr3:49425171-49425361]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40879[chr3:49425171-49425361]
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Tissue distribution of vista40879
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Transcription factor that possibly regulate vista40879[chr3:49425171-49425361]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 49425170 49425185 FOXP1 JASPAR yes 2286115
chr3 49425170 49425185 FOXP1 JASPAR yes 70980069
chr3 49425170 49425191 IRF1 JASPAR yes 2286116
chr3 49425170 49425191 IRF1 JASPAR yes 70980070
chr3 49425173 49425188 FOXP1 JASPAR yes 2286117
chr3 49425173 49425188 FOXP1 JASPAR yes 70980071
chr3 49425174 49425189 STAT2 JASPAR yes 2286118
chr3 49425174 49425189 STAT2 JASPAR yes 70980072
chr3 49425175 49425190 FOXP1 JASPAR yes 2286119
chr3 49425175 49425190 FOXP1 JASPAR yes 70980073
chr3 49425175 49425196 IRF1 JASPAR yes 2286120
chr3 49425175 49425196 IRF1 JASPAR yes 70980074
chr3 49425176 49425197 IRF1 JASPAR yes 2286121
chr3 49425176 49425197 IRF1 JASPAR yes 70980075
chr3 49425177 49425189 FOXC2 JASPAR yes 2286122
chr3 49425177 49425189 FOXC2 JASPAR yes 70980076
chr3 49425177 49425197 RREB1 JASPAR yes 2286123
chr3 49425177 49425197 RREB1 JASPAR yes 70980077
chr3 49425178 49425189 FOXP2 JASPAR yes 2286124
chr3 49425178 49425189 FOXP2 JASPAR yes 70980078
chr3 49425180 49425195 FOXP1 JASPAR yes 2286125
chr3 49425180 49425195 FOXP1 JASPAR yes 70980079
chr3 49425182 49425197 FOXP1 JASPAR yes 2286126
chr3 49425182 49425197 FOXP1 JASPAR yes 70980080
chr3 49425182 49425203 IRF1 JASPAR yes 2286127
chr3 49425182 49425203 IRF1 JASPAR yes 70980081
chr3 49425186 49425201 STAT2 JASPAR yes 2286128
chr3 49425186 49425201 STAT2 JASPAR yes 70980082
chr3 49425202 49425214 FOXI1 JASPAR yes 2286129
chr3 49425202 49425214 FOXI1 JASPAR yes 70980083
chr3 49425203 49425215 FOXC2 JASPAR yes 2286130
chr3 49425203 49425215 FOXC2 JASPAR yes 70980084
chr3 49425205 49425216 FOXA1 JASPAR yes 2286131
chr3 49425205 49425216 FOXA1 JASPAR yes 70980085
chr3 49425206 49425221 FOXP1 JASPAR yes 2286132
chr3 49425206 49425221 FOXP1 JASPAR yes 70980086
chr3 49425207 49425216 SRY JASPAR yes 2286133
chr3 49425207 49425216 SRY JASPAR yes 70980087
chr3 49425207 49425218 FOXP2 JASPAR yes 2286134
chr3 49425207 49425218 FOXP2 JASPAR yes 70980088
chr3 49425220 49425230 HOXC10 JASPAR yes 2286135
chr3 49425220 49425230 HOXD11 JASPAR yes 2286136
chr3 49425220 49425230 HOXC10 JASPAR yes 70980089
chr3 49425220 49425230 HOXD11 JASPAR yes 70980090
chr3 49425221 49425230 CDX1 JASPAR yes 2286137
chr3 49425221 49425230 CDX1 JASPAR yes 70980091
chr3 49425229 49425242 POU2F2 JASPAR yes 2286138
chr3 49425229 49425242 POU2F2 JASPAR yes 70980092
chr3 49425231 49425243 POU2F1 JASPAR yes 2286139
chr3 49425231 49425243 POU2F1 JASPAR yes 70980093
chr3 49425232 49425241 POU3F4 JASPAR yes 2286140
chr3 49425232 49425241 POU5F1B JASPAR yes 2286141
chr3 49425232 49425241 POU3F4 JASPAR yes 70980094
chr3 49425232 49425241 POU5F1B JASPAR yes 70980095
chr3 49425241 49425245 YY1 TRANSFAC yes 2286142
chr3 49425241 49425245 YY1 TRANSFAC yes 70980096
chr3 49425259 49425264 GATA1 TRANSFAC yes 2286143
chr3 49425259 49425264 GATA1 TRANSFAC yes 70980097
chr3 49425277 49425291 SPIC JASPAR yes 2286144
chr3 49425277 49425291 SPIC JASPAR yes 70980098
chr3 49425281 49425288 SPIB JASPAR yes 2286145
chr3 49425281 49425288 SPIB JASPAR yes 70980099
chr3 49425293 49425302 SRY JASPAR yes 2286146
chr3 49425293 49425302 SRY JASPAR yes 70980100
chr3 49425295 49425298 MYB TRANSFAC yes 2286147
chr3 49425295 49425298 MYB TRANSFAC yes 70980101
chr3 49425297 49425308 ESRRA JASPAR yes 2286148
chr3 49425297 49425308 ESRRA JASPAR yes 70980102
chr3 49425303 49425315 BHLHE23 JASPAR yes 2286149
chr3 49425303 49425315 BHLHE23 JASPAR yes 70980103
chr3 49425304 49425314 BHLHE22 JASPAR yes 2286150
chr3 49425304 49425314 OLIG1 JASPAR yes 2286151
chr3 49425304 49425314 OLIG2 JASPAR yes 2286152
chr3 49425304 49425314 OLIG3 JASPAR yes 2286153
chr3 49425304 49425314 BHLHE22 JASPAR yes 70980104
chr3 49425304 49425314 OLIG1 JASPAR yes 70980105
chr3 49425304 49425314 OLIG2 JASPAR yes 70980106
chr3 49425304 49425314 OLIG3 JASPAR yes 70980107
chr3 49425304 49425316 TAL1 JASPAR yes 2286154
chr3 49425304 49425316 TAL1 JASPAR yes 70980108
chr3 49425310 49425321 BATF JASPAR yes 2286155
chr3 49425310 49425321 BATF JASPAR yes 70980109
chr3 49425312 49425323 FOSL1 JASPAR yes 2286156
chr3 49425312 49425323 FOSL1 JASPAR yes 70980110
chr3 49425313 49425324 JUNB JASPAR yes 2286157
chr3 49425313 49425324 JUNB JASPAR yes 70980111
chr3 49425313 49425327 JUN JASPAR yes 2286158
chr3 49425313 49425327 JUN JASPAR yes 70980112
chr3 49425321 49425339 RARA JASPAR yes 2286159
chr3 49425321 49425339 RARA JASPAR yes 70980113
chr3 49425358 49425371 SMAD2 JASPAR yes 2286160
chr3 49425358 49425371 SMAD2 JASPAR yes 70980114
SNP sites on vista40879[chr3:49425171-49425361]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 49425180 rs138478251 A C
FOXC2 FOXP1 FOXP2 IRF1 RREB1 STAT2
6725430
chr3 49425186 rs36093993 C CA
FOXC2 FOXP1 FOXP2 IRF1 RREB1 STAT2
6725431
chr3 49425186 rs557408661 C CA
FOXC2 FOXP1 FOXP2 IRF1 RREB1 STAT2
6725432
chr3 49425217 rs143948946 T C
FOXP1 FOXP2
6725433
chr3 49425257 rs143099387 T C no 6725434
Genes possibly regulated by vista40879[chr3:49425171-49425361]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 49315264 49378145 - USP4 ENSG00000114316.8 49378145 0.67 1.0 3670 52974
chr3 49394609 49396033 - GPX1 ENSG00000233276.2 49396033 0.77 1.0 3671 70862
chr3 49396578 49450431 - RHOA ENSG00000067560.6 49450431 0.61 1.0 3672 74930
chr3 49449639 49453908 + TCTA ENSG00000145022.4 49449639 0.73 0.99 3673 75722
chr3 49454211 49460186 - AMT ENSG00000145020.10 49460186 0.69 1.0 3674 65175
chr3 49460379 49466759 - NICN1 ENSG00000145029.7 49466759 0.66 1.0 3675 58602
chr3 49506146 49573048 + DAG1 ENSG00000173402.7 49506146 0.75 1.0 3676 19215
Expression level of Genes
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miRNAs possibly regulated by vista40879[chr3:49425171-49425361]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results