EnhancerDB
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  3. vista40896[chr3:50246310-50246610]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40896[chr3:50246310-50246610]
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Tissue distribution of vista40896
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Transcription factor that possibly regulate vista40896[chr3:50246310-50246610]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 50246293 50246596 RXRA UCSC Txn Factor no Conserved 108529170
chr3 50246301 50246619 EP300 UCSC Txn Factor no Conserved 108529171
chr3 50246335 50246579 FOXA1 UCSC Txn Factor no Conserved 108529172
chr3 50246411 50246681 USF1 UCSC Txn Factor no Conserved 108529173
chr3 50246438 50246628 BHLHE40 UCSC Txn Factor no Conserved 108529174
chr3 50246299 50246312 SMAD2 JASPAR yes 2321216
chr3 50246299 50246312 SMAD2 JASPAR yes 70980684
chr3 50246302 50246323 ZNF263 JASPAR yes 2321217
chr3 50246302 50246323 ZNF263 JASPAR yes 70980685
chr3 50246308 50246329 ZNF263 JASPAR yes 2321221
chr3 50246308 50246329 ZNF263 JASPAR yes 70980686
chr3 50246309 50246330 ZNF263 JASPAR yes 2321222
chr3 50246309 50246330 ZNF263 JASPAR yes 70980687
chr3 50246310 50246321 E2F6 JASPAR yes 2321223
chr3 50246310 50246321 E2F6 JASPAR yes 70980688
chr3 50246312 50246333 ZNF263 JASPAR yes 2321224
chr3 50246312 50246333 ZNF263 JASPAR yes 70980689
chr3 50246314 50246335 ZNF263 JASPAR yes 2321225
chr3 50246314 50246335 ZNF263 JASPAR yes 70980690
chr3 50246315 50246336 ZNF263 JASPAR yes 2321226
chr3 50246315 50246336 ZNF263 JASPAR yes 70980691
chr3 50246329 50246340 ELF5 JASPAR yes 2321227
chr3 50246329 50246340 ELF5 JASPAR yes 70980692
chr3 50246329 50246342 ELF1 JASPAR yes 2321228
chr3 50246329 50246342 ELF1 JASPAR yes 70980693
chr3 50246329 50246343 SPIC JASPAR yes 2321229
chr3 50246329 50246343 SPIC JASPAR yes 70980694
chr3 50246331 50246344 ZBTB18 JASPAR yes 2321230
chr3 50246331 50246344 ZBTB18 JASPAR yes 70980695
chr3 50246348 50246358 MZF1 JASPAR yes 2321231
chr3 50246348 50246358 MZF1 JASPAR yes 70980696
chr3 50246351 50246357 SP1 TRANSFAC yes 2321232
chr3 50246351 50246357 SP1 TRANSFAC yes 70980697
chr3 50246351 50246361 SP1 JASPAR yes 2321233
chr3 50246351 50246361 SP1 JASPAR yes 70980698
chr3 50246352 50246367 TFAP2C JASPAR yes 2321234
chr3 50246352 50246367 TFAP2C JASPAR yes 70980699
chr3 50246363 50246374 ESRRA JASPAR yes 2321235
chr3 50246363 50246374 ESRRB JASPAR yes 2321236
chr3 50246363 50246374 ESRRA JASPAR yes 70980700
chr3 50246363 50246374 ESRRB JASPAR yes 70980701
chr3 50246398 50246409 NFE2 JASPAR yes 2321237
chr3 50246398 50246409 NFE2 JASPAR yes 70980702
chr3 50246409 50246424 TFAP2A JASPAR yes 2321238
chr3 50246409 50246424 TFAP2C JASPAR yes 2321239
chr3 50246409 50246424 TFAP2A JASPAR yes 70980703
chr3 50246409 50246424 TFAP2C JASPAR yes 70980704
chr3 50246412 50246423 TFAP2A JASPAR yes 2321240
chr3 50246412 50246423 TFAP2B JASPAR yes 2321241
chr3 50246412 50246423 TFAP2C JASPAR yes 2321242
chr3 50246412 50246423 TFAP2A JASPAR yes 70980705
chr3 50246412 50246423 TFAP2B JASPAR yes 70980706
chr3 50246412 50246423 TFAP2C JASPAR yes 70980707
chr3 50246412 50246424 TFAP2A JASPAR yes 2321243
chr3 50246412 50246424 TFAP2B JASPAR yes 2321244
chr3 50246412 50246424 TFAP2C JASPAR yes 2321245
chr3 50246412 50246424 TFAP2A JASPAR yes 70980708
chr3 50246412 50246424 TFAP2B JASPAR yes 70980709
chr3 50246412 50246424 TFAP2C JASPAR yes 70980710
chr3 50246413 50246422 TFAP2A JASPAR yes 2321246
chr3 50246413 50246422 TFAP2A JASPAR yes 70980711
chr3 50246441 50246446 SP1 TRANSFAC yes 2321247
chr3 50246441 50246446 SP1 TRANSFAC yes 70980712
chr3 50246457 50246461 NFE TRANSFAC yes 2321248
chr3 50246457 50246461 NFE TRANSFAC yes 70980713
chr3 50246466 50246470 YY1 TRANSFAC yes 2321249
chr3 50246466 50246470 YY1 TRANSFAC yes 70980714
chr3 50246472 50246487 TFAP2C JASPAR yes 2321250
chr3 50246472 50246487 TFAP2C JASPAR yes 70980715
chr3 50246474 50246487 TFAP2A JASPAR yes 2321251
chr3 50246474 50246487 TFAP2B JASPAR yes 2321252
chr3 50246474 50246487 TFAP2C JASPAR yes 2321253
chr3 50246474 50246487 TFAP2A JASPAR yes 70980716
chr3 50246474 50246487 TFAP2B JASPAR yes 70980717
chr3 50246474 50246487 TFAP2C JASPAR yes 70980718
chr3 50246475 50246486 EBF1 JASPAR yes 2321254
chr3 50246475 50246486 EBF1 JASPAR yes 70980719
chr3 50246480 50246496 ZNF143 JASPAR yes 2321255
chr3 50246480 50246496 ZNF143 JASPAR yes 70980720
chr3 50246483 50246500 BCL6B JASPAR yes 2321256
chr3 50246483 50246500 BCL6B JASPAR yes 70980721
chr3 50246492 50246496 ESR1 TRANSFAC yes 2321257
chr3 50246492 50246496 ESR1 TRANSFAC yes 70980722
chr3 50246532 50246542 SP1 JASPAR yes 2321258
chr3 50246532 50246542 SP1 JASPAR yes 70980723
chr3 50246535 50246541 NFE2 TRANSFAC yes 2321259
chr3 50246535 50246541 NFE2 TRANSFAC yes 70980724
chr3 50246536 50246547 EBF1 JASPAR yes 2321260
chr3 50246536 50246547 EBF1 JASPAR yes 70980725
chr3 50246536 50246548 TFAP2B JASPAR yes 2321261
chr3 50246536 50246548 TFAP2C JASPAR yes 2321262
chr3 50246536 50246548 TFAP2B JASPAR yes 70980726
chr3 50246536 50246548 TFAP2C JASPAR yes 70980727
chr3 50246536 50246549 TFAP2A JASPAR yes 2321263
chr3 50246536 50246549 TFAP2B JASPAR yes 2321264
chr3 50246536 50246549 TFAP2C JASPAR yes 2321265
chr3 50246536 50246549 TFAP2A JASPAR yes 70980728
chr3 50246536 50246549 TFAP2B JASPAR yes 70980729
chr3 50246536 50246549 TFAP2C JASPAR yes 70980730
chr3 50246537 50246550 TFAP2A JASPAR yes 2321266
chr3 50246537 50246550 TFAP2A JASPAR yes 70980731
chr3 50246537 50246551 GLIS2 JASPAR yes 2321267
chr3 50246537 50246551 GLIS2 JASPAR yes 70980732
chr3 50246538 50246549 EBF1 JASPAR yes 2321268
chr3 50246538 50246549 EBF1 JASPAR yes 70980733
chr3 50246545 50246550 SP1 TRANSFAC yes 2321269
chr3 50246545 50246550 SP1 TRANSFAC yes 70980734
chr3 50246545 50246563 ESR1 JASPAR yes 2321270
chr3 50246545 50246563 ESR1 JASPAR yes 70980735
chr3 50246553 50246563 MAX JASPAR yes 2321271
chr3 50246553 50246563 MAX JASPAR yes 70980736
chr3 50246553 50246564 USF1 JASPAR yes 2321272
chr3 50246553 50246564 USF2 JASPAR yes 2321273
chr3 50246553 50246564 USF1 JASPAR yes 70980737
chr3 50246553 50246564 USF2 JASPAR yes 70980738
chr3 50246554 50246564 BHLHE40 JASPAR yes 2321274
chr3 50246554 50246564 BHLHE41 JASPAR yes 2321275
chr3 50246554 50246564 MLXIPL JASPAR yes 2321276
chr3 50246554 50246564 MLX JASPAR yes 2321277
chr3 50246554 50246564 SREBF1 JASPAR yes 2321278
chr3 50246554 50246564 SREBF2 JASPAR yes 2321279
chr3 50246554 50246564 TFE3 JASPAR yes 2321280
chr3 50246554 50246564 TFEB JASPAR yes 2321281
chr3 50246554 50246564 TFEC JASPAR yes 2321282
chr3 50246554 50246564 BHLHE40 JASPAR yes 70980739
chr3 50246554 50246564 BHLHE41 JASPAR yes 70980740
chr3 50246554 50246564 MLXIPL JASPAR yes 70980741
chr3 50246554 50246564 MLX JASPAR yes 70980742
chr3 50246554 50246564 SREBF1 JASPAR yes 70980743
chr3 50246554 50246564 SREBF2 JASPAR yes 70980744
chr3 50246554 50246564 TFE3 JASPAR yes 70980745
chr3 50246554 50246564 TFEB JASPAR yes 70980746
chr3 50246554 50246564 TFEC JASPAR yes 70980747
chr3 50246554 50246565 USF1 JASPAR yes 2321283
chr3 50246554 50246565 USF2 JASPAR yes 2321284
chr3 50246554 50246565 USF1 JASPAR yes 70980748
chr3 50246554 50246565 USF2 JASPAR yes 70980749
chr3 50246555 50246565 MAX JASPAR yes 2321285
chr3 50246555 50246565 MAX JASPAR yes 70980750
chr3 50246556 50246561 MYC TRANSFAC yes 2321286
chr3 50246556 50246561 USF1 TRANSFAC yes 2321287
chr3 50246556 50246561 USF2 TRANSFAC yes 2321288
chr3 50246556 50246561 MYC TRANSFAC yes 70980751
chr3 50246556 50246561 USF1 TRANSFAC yes 70980752
chr3 50246556 50246561 USF2 TRANSFAC yes 70980753
chr3 50246567 50246571 NFE TRANSFAC yes 2321289
chr3 50246567 50246571 NFE TRANSFAC yes 70980754
chr3 50246577 50246589 NHLH1 JASPAR yes 2321290
chr3 50246577 50246589 NHLH1 JASPAR yes 70980755
chr3 50246578 50246588 NHLH1 JASPAR yes 2321291
chr3 50246578 50246588 NHLH1 JASPAR yes 70980756
chr3 50246586 50246597 TFAP2A JASPAR yes 2321292
chr3 50246586 50246597 TFAP2B JASPAR yes 2321293
chr3 50246586 50246597 TFAP2C JASPAR yes 2321294
chr3 50246586 50246597 TFAP2A JASPAR yes 70980757
chr3 50246586 50246597 TFAP2B JASPAR yes 70980758
chr3 50246586 50246597 TFAP2C JASPAR yes 70980759
chr3 50246604 50246615 STAT3 JASPAR yes 2321295
chr3 50246604 50246615 STAT3 JASPAR yes 70980760
chr3 50246607 50246621 ZIC1 JASPAR yes 2321296
chr3 50246607 50246621 ZIC1 JASPAR yes 70980761
SNP sites on vista40896[chr3:50246310-50246610]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 50246317 rs77438249 C T
E2F6 EP300 RXRA ZNF263
6728103
chr3 50246385 rs77984349 C G
EP300 FOXA1 RXRA
6728104
chr3 50246403 rs77734776 A G
EP300 FOXA1 NFE2 RXRA
6728105
chr3 50246505 rs192606349 G A
BHLHE40 EP300 FOXA1 RXRA USF1
6728106
Genes possibly regulated by vista40896[chr3:50246310-50246610]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 50192478 50226508 + SEMA3F ENSG00000001617.7 50192478 0.81 1.0 3694 46168
chr3 50229045 50233949 + GNAT1 ENSG00000114349.5 50229045 0.89 1.0 3695 82735
chr3 50263724 50296787 + GNAI2 ENSG00000114353.12 50263724 0.7 1.0 3696 82886
chr3 50316458 50325545 + LSMEM2 ENSG00000179564.3 50316458 0.97 1.0 3697 30152
chr3 50325163 50330349 - IFRD2 ENSG00000214706.6 50330349 0.69 1.0 3698 16261
chr3 50330262 50336899 - HYAL3 ENSG00000186792.11 50336899 0.77 0.99 3699 9711
chr3 50333833 50336852 - NAT6 ENSG00000243477.1 50336852 0.59 1.0 3700 9758
Expression level of Genes
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miRNAs possibly regulated by vista40896[chr3:50246310-50246610]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results