EnhancerDB
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  3. vista40897[chr3:50264852-50265230]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40897[chr3:50264852-50265230]
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Tissue distribution of vista40897
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Transcription factor that possibly regulate vista40897[chr3:50264852-50265230]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 50264638 50265770 POLR2A UCSC Txn Factor no Conserved 108529175
chr3 50264735 50265127 CTCF UCSC Txn Factor no Conserved 108529176
chr3 50264784 50265240 E2F4 UCSC Txn Factor no Conserved 108529177
chr3 50264804 50265263 GABPA UCSC Txn Factor no Conserved 108529178
chr3 50264813 50265107 RAD21 UCSC Txn Factor no Conserved 108529179
chr3 50264829 50265101 SMC3 UCSC Txn Factor no Conserved 108529180
chr3 50264832 50265151 ZNF143 UCSC Txn Factor no Conserved 108529181
chr3 50264847 50265198 ELF1 UCSC Txn Factor no Conserved 108529182
chr3 50264889 50265139 SP2 UCSC Txn Factor no Conserved 108529183
chr3 50264903 50265217 EGR1 UCSC Txn Factor no Conserved 108529184
chr3 50264854 50264859 SP1 TRANSFAC yes 70980762
chr3 50264861 50264871 SP1 JASPAR yes 70980763
chr3 50264863 50264868 SP1 TRANSFAC yes 70980764
chr3 50264864 50264869 SP1 TRANSFAC yes 70980765
chr3 50264864 50264870 SP1 TRANSFAC yes 70980766
chr3 50264867 50264877 SP1 JASPAR yes 70980767
chr3 50264867 50264888 ZNF263 JASPAR yes 70980768
chr3 50264903 50264914 E2F4 JASPAR yes 70980769
chr3 50264903 50264914 E2F6 JASPAR yes 70980770
chr3 50264904 50264915 E2F1 JASPAR yes 70980771
chr3 50264916 50264930 PLAG1 JASPAR yes 70980772
chr3 50264923 50264942 CTCF JASPAR yes 70980773
chr3 50264942 50264948 NFE2 TRANSFAC yes 70980774
chr3 50264958 50264977 CTCF JASPAR yes 70980775
chr3 50264966 50264981 RFX5 JASPAR yes 70980776
chr3 50265004 50265017 ELF1 JASPAR yes 70980777
chr3 50265005 50265015 ELK1 JASPAR yes 70980778
chr3 50265005 50265017 ELF1 JASPAR yes 70980779
chr3 50265007 50265017 GABPA JASPAR yes 70980780
chr3 50265007 50265018 ELK4 JASPAR yes 70980781
chr3 50265009 50265015 ETS1 JASPAR yes 70980782
chr3 50265009 50265015 SPI1 JASPAR yes 70980783
chr3 50265015 50265020 SP1 TRANSFAC yes 70980784
chr3 50265026 50265041 TFAP2C JASPAR yes 70980785
chr3 50265030 50265039 TFAP2A JASPAR yes 70980786
chr3 50265038 50265049 ELK4 JASPAR yes 70980787
chr3 50265038 50265049 FLI1 JASPAR yes 70980788
chr3 50265038 50265051 ELF3 JASPAR yes 70980789
chr3 50265039 50265049 ELK1 JASPAR yes 70980790
chr3 50265039 50265049 ELK3 JASPAR yes 70980791
chr3 50265039 50265049 ERF JASPAR yes 70980792
chr3 50265039 50265049 ERG JASPAR yes 70980793
chr3 50265039 50265049 ETS1 JASPAR yes 70980794
chr3 50265039 50265049 ETV1 JASPAR yes 70980795
chr3 50265039 50265049 ETV3 JASPAR yes 70980796
chr3 50265039 50265049 ETV4 JASPAR yes 70980797
chr3 50265039 50265049 ETV5 JASPAR yes 70980798
chr3 50265039 50265049 ETV6 JASPAR yes 70980799
chr3 50265039 50265049 FEV JASPAR yes 70980800
chr3 50265039 50265049 FLI1 JASPAR yes 70980801
chr3 50265039 50265049 GABPA JASPAR yes 70980802
chr3 50265039 50265050 ELF5 JASPAR yes 70980803
chr3 50265039 50265050 SPDEF JASPAR yes 70980804
chr3 50265039 50265051 EHF JASPAR yes 70980805
chr3 50265039 50265051 ELF1 JASPAR yes 70980806
chr3 50265039 50265051 ELF4 JASPAR yes 70980807
chr3 50265039 50265052 ELF1 JASPAR yes 70980808
chr3 50265040 50265049 ELK4 JASPAR yes 70980809
chr3 50265041 50265047 ETS1 JASPAR yes 70980810
chr3 50265041 50265047 SPI1 JASPAR yes 70980811
chr3 50265041 50265051 ELK1 JASPAR yes 70980812
chr3 50265080 50265092 PROX1 JASPAR yes 70980813
chr3 50265085 50265096 TFAP2A JASPAR yes 70980814
chr3 50265085 50265096 TFAP2B JASPAR yes 70980815
chr3 50265085 50265096 TFAP2C JASPAR yes 70980816
chr3 50265089 50265099 SP1 JASPAR yes 70980817
chr3 50265090 50265099 SP1 TRANSFAC yes 70980818
chr3 50265091 50265096 SP1 TRANSFAC yes 70980819
chr3 50265092 50265097 SP1 TRANSFAC yes 70980820
chr3 50265092 50265098 SP1 TRANSFAC yes 70980821
chr3 50265146 50265167 ZNF263 JASPAR yes 70980822
chr3 50265155 50265165 MZF1 JASPAR yes 70980823
chr3 50265176 50265182 MAZ TRANSFAC yes 70980824
chr3 50265185 50265203 ESR1 JASPAR yes 70980825
chr3 50265188 50265193 SP1 TRANSFAC yes 70980826
chr3 50265189 50265199 SP1 JASPAR yes 70980827
chr3 50265191 50265195 LFA1 TRANSFAC yes 70980828
chr3 50265199 50265210 ESRRA JASPAR yes 70980829
chr3 50265203 50265207 LFA1 TRANSFAC yes 70980830
SNP sites on vista40897[chr3:50264852-50265230]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 50265096 rs12631192 G T
CTCF E2F4 EGR1 ELF1 GABPA POLR2A RAD21 SMC3 SP1 SP2 TFAP2A TFAP2B TFAP2C ZNF143
6728151
Genes possibly regulated by vista40897[chr3:50264852-50265230]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 50192478 50226508 + SEMA3F ENSG00000001617.7 50192478 0.81 1.0 3694 27626
chr3 50229045 50233949 + GNAT1 ENSG00000114349.5 50229045 0.89 1.0 3695 64193
chr3 50263724 50296787 + GNAI2 ENSG00000114353.12 50263724 0.7 1.0 3696 98872
chr3 50316458 50325545 + LSMEM2 ENSG00000179564.3 50316458 0.97 1.0 3697 48772
chr3 50325163 50330349 - IFRD2 ENSG00000214706.6 50330349 0.69 1.0 3698 34881
chr3 50330262 50336899 - HYAL3 ENSG00000186792.11 50336899 0.77 0.99 3699 28331
chr3 50333833 50336852 - NAT6 ENSG00000243477.1 50336852 0.59 1.0 3700 28378
chr3 50337320 50349812 - HYAL1 ENSG00000114378.12 50349812 0.91 1.0 3701 15418
chr3 50355221 50360337 - HYAL2 ENSG00000068001.9 50360337 0.87 1.0 3702 4893
Expression level of Genes
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miRNAs possibly regulated by vista40897[chr3:50264852-50265230]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results