EnhancerDB
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  3. vista40899[chr3:50280308-50280577]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40899[chr3:50280308-50280577]
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Tissue distribution of vista40899
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Transcription factor that possibly regulate vista40899[chr3:50280308-50280577]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 50280353 50280583 SPI1 UCSC Txn Factor no Conserved 108529185
chr3 50280302 50280314 POU2F1 JASPAR yes 2323289
chr3 50280302 50280314 POU2F1 JASPAR yes 70980848
chr3 50280302 50280316 POU1F1 JASPAR yes 2323290
chr3 50280302 50280316 POU1F1 JASPAR yes 70980849
chr3 50280303 50280315 POU3F1 JASPAR yes 2323291
chr3 50280303 50280315 POU3F2 JASPAR yes 2323292
chr3 50280303 50280315 POU3F1 JASPAR yes 70980850
chr3 50280303 50280315 POU3F2 JASPAR yes 70980851
chr3 50280303 50280316 POU2F2 JASPAR yes 2323293
chr3 50280303 50280316 POU2F2 JASPAR yes 70980852
chr3 50280304 50280313 POU3F4 JASPAR yes 2323294
chr3 50280304 50280313 POU5F1B JASPAR yes 2323295
chr3 50280304 50280313 POU3F4 JASPAR yes 70980853
chr3 50280304 50280313 POU5F1B JASPAR yes 70980854
chr3 50280306 50280312 TCF4 TRANSFAC yes 2323296
chr3 50280306 50280312 TCF4 TRANSFAC yes 70980855
chr3 50280317 50280326 THAP1 JASPAR yes 2323297
chr3 50280317 50280326 THAP1 JASPAR yes 70980856
chr3 50280318 50280324 YY1 JASPAR yes 2323298
chr3 50280318 50280324 YY1 JASPAR yes 70980857
chr3 50280339 50280350 TFAP2A JASPAR yes 2323299
chr3 50280339 50280350 TFAP2B JASPAR yes 2323300
chr3 50280339 50280350 TFAP2C JASPAR yes 2323301
chr3 50280339 50280350 TFAP2A JASPAR yes 70980858
chr3 50280339 50280350 TFAP2B JASPAR yes 70980859
chr3 50280339 50280350 TFAP2C JASPAR yes 70980860
chr3 50280340 50280349 TFAP2A JASPAR yes 2323302
chr3 50280340 50280349 TFAP2A JASPAR yes 70980861
chr3 50280345 50280356 E2F4 JASPAR yes 2323303
chr3 50280345 50280356 E2F6 JASPAR yes 2323304
chr3 50280345 50280356 E2F4 JASPAR yes 70980862
chr3 50280345 50280356 E2F6 JASPAR yes 70980863
chr3 50280346 50280351 SP1 TRANSFAC yes 2323305
chr3 50280346 50280351 SP1 TRANSFAC yes 70980864
chr3 50280350 50280360 SP1 JASPAR yes 2323306
chr3 50280350 50280360 SP1 JASPAR yes 70980865
chr3 50280350 50280371 ZNF263 JASPAR yes 2323307
chr3 50280350 50280371 ZNF263 JASPAR yes 70980866
chr3 50280361 50280375 BATF3 JASPAR yes 2323308
chr3 50280361 50280375 BATF3 JASPAR yes 70980867
chr3 50280375 50280395 TP63 JASPAR yes 2323309
chr3 50280375 50280395 TP63 JASPAR yes 70980868
chr3 50280385 50280389 LFA1 TRANSFAC yes 2323310
chr3 50280385 50280389 LFA1 TRANSFAC yes 70980869
chr3 50280395 50280409 PLAG1 JASPAR yes 2323311
chr3 50280395 50280409 PLAG1 JASPAR yes 70980870
chr3 50280403 50280413 ETV6 JASPAR yes 2323312
chr3 50280403 50280413 ETV6 JASPAR yes 70980871
chr3 50280405 50280410 ETS2 TRANSFAC yes 2323313
chr3 50280405 50280410 ETS2 TRANSFAC yes 70980872
chr3 50280424 50280431 SPIB JASPAR yes 2323314
chr3 50280424 50280431 SPIB JASPAR yes 70980873
chr3 50280429 50280443 SPI1 JASPAR yes 2323315
chr3 50280429 50280443 SPI1 JASPAR yes 70980874
chr3 50280430 50280443 ELF1 JASPAR yes 2323316
chr3 50280430 50280443 ELF1 JASPAR yes 70980875
chr3 50280430 50280451 ZNF263 JASPAR yes 2323317
chr3 50280430 50280451 ZNF263 JASPAR yes 70980876
chr3 50280433 50280439 PEA3 TRANSFAC yes 2323318
chr3 50280433 50280439 PEA3 TRANSFAC yes 70980877
chr3 50280433 50280444 FLI1 JASPAR yes 2323319
chr3 50280433 50280444 FLI1 JASPAR yes 70980878
chr3 50280433 50280454 ZNF263 JASPAR yes 2323320
chr3 50280433 50280454 ZNF263 JASPAR yes 70980879
chr3 50280434 50280455 ZNF263 JASPAR yes 2323321
chr3 50280434 50280455 ZNF263 JASPAR yes 70980880
chr3 50280437 50280458 ZNF263 JASPAR yes 2323322
chr3 50280437 50280458 ZNF263 JASPAR yes 70980881
chr3 50280438 50280450 NHLH1 JASPAR yes 2323323
chr3 50280438 50280450 NHLH1 JASPAR yes 70980882
chr3 50280439 50280449 NHLH1 JASPAR yes 2323324
chr3 50280439 50280449 NHLH1 JASPAR yes 70980883
chr3 50280446 50280456 SP1 JASPAR yes 2323325
chr3 50280446 50280456 SP1 JASPAR yes 70980884
chr3 50280449 50280459 SP1 JASPAR yes 2323326
chr3 50280449 50280459 SP1 JASPAR yes 70980885
chr3 50280449 50280470 ZNF263 JASPAR yes 2323327
chr3 50280449 50280470 ZNF263 JASPAR yes 70980886
chr3 50280452 50280473 ZNF263 JASPAR yes 2323328
chr3 50280452 50280473 ZNF263 JASPAR yes 70980887
chr3 50280455 50280473 SRF JASPAR yes 2323329
chr3 50280455 50280473 SRF JASPAR yes 70980888
chr3 50280461 50280475 SPI1 JASPAR yes 2323330
chr3 50280461 50280475 SPIC JASPAR yes 2323331
chr3 50280461 50280475 SPI1 JASPAR yes 70980889
chr3 50280461 50280475 SPIC JASPAR yes 70980890
chr3 50280462 50280475 ELF1 JASPAR yes 2323332
chr3 50280462 50280475 ELF1 JASPAR yes 70980891
chr3 50280465 50280472 SPIB JASPAR yes 2323333
chr3 50280465 50280472 SPIB JASPAR yes 70980892
chr3 50280465 50280475 GABPA JASPAR yes 2323334
chr3 50280465 50280475 GABPA JASPAR yes 70980893
chr3 50280471 50280486 HNF4G JASPAR yes 2323335
chr3 50280471 50280486 HNF4G JASPAR yes 70980894
chr3 50280472 50280487 HNF4A JASPAR yes 2323336
chr3 50280472 50280487 HNF4A JASPAR yes 70980895
chr3 50280487 50280502 RFX5 JASPAR yes 2323337
chr3 50280487 50280502 RFX5 JASPAR yes 70980896
chr3 50280498 50280503 SP1 TRANSFAC yes 2323338
chr3 50280498 50280503 SP1 TRANSFAC yes 70980897
chr3 50280499 50280509 ZNF740 JASPAR yes 2323339
chr3 50280499 50280509 ZNF740 JASPAR yes 70980898
chr3 50280507 50280522 TFAP2A JASPAR yes 2323340
chr3 50280507 50280522 TFAP2A JASPAR yes 70980899
chr3 50280508 50280523 HNF4G JASPAR yes 2323341
chr3 50280508 50280523 HNF4G JASPAR yes 70980900
chr3 50280517 50280532 TFAP2A JASPAR yes 2323342
chr3 50280517 50280532 TFAP2C JASPAR yes 2323343
chr3 50280517 50280532 TFAP2A JASPAR yes 70980901
chr3 50280517 50280532 TFAP2C JASPAR yes 70980902
chr3 50280518 50280533 ZIC3 JASPAR yes 2323344
chr3 50280518 50280533 ZIC4 JASPAR yes 2323345
chr3 50280518 50280533 ZIC3 JASPAR yes 70980903
chr3 50280518 50280533 ZIC4 JASPAR yes 70980904
chr3 50280519 50280532 TFAP2A JASPAR yes 2323346
chr3 50280519 50280532 TFAP2B JASPAR yes 2323347
chr3 50280519 50280532 TFAP2C JASPAR yes 2323348
chr3 50280519 50280532 TFAP2A JASPAR yes 70980905
chr3 50280519 50280532 TFAP2B JASPAR yes 70980906
chr3 50280519 50280532 TFAP2C JASPAR yes 70980907
chr3 50280520 50280531 EBF1 JASPAR yes 2323349
chr3 50280520 50280531 EBF1 JASPAR yes 70980908
chr3 50280520 50280532 TFAP2A JASPAR yes 2323350
chr3 50280520 50280532 TFAP2B JASPAR yes 2323351
chr3 50280520 50280532 TFAP2C JASPAR yes 2323352
chr3 50280520 50280532 TFAP2A JASPAR yes 70980909
chr3 50280520 50280532 TFAP2B JASPAR yes 70980910
chr3 50280520 50280532 TFAP2C JASPAR yes 70980911
chr3 50280522 50280531 TFAP2A JASPAR yes 2323353
chr3 50280522 50280531 TFAP2A JASPAR yes 70980912
chr3 50280531 50280541 NFIA JASPAR yes 2323354
chr3 50280531 50280541 NFIA JASPAR yes 70980913
chr3 50280533 50280539 NFIC JASPAR yes 2323355
chr3 50280533 50280539 NFIC JASPAR yes 70980914
chr3 50280541 50280556 HSF1 JASPAR yes 2323356
chr3 50280541 50280556 HSF1 JASPAR yes 70980915
chr3 50280558 50280578 TP53 JASPAR yes 2323357
chr3 50280558 50280578 TP53 JASPAR yes 70980916
chr3 50280559 50280569 FIGLA JASPAR yes 2323358
chr3 50280559 50280569 ID4 JASPAR yes 2323359
chr3 50280559 50280569 MSC JASPAR yes 2323360
chr3 50280559 50280569 TCF3 JASPAR yes 2323361
chr3 50280559 50280569 TCF4 JASPAR yes 2323362
chr3 50280559 50280569 FIGLA JASPAR yes 70980917
chr3 50280559 50280569 ID4 JASPAR yes 70980918
chr3 50280559 50280569 MSC JASPAR yes 70980919
chr3 50280559 50280569 TCF3 JASPAR yes 70980920
chr3 50280559 50280569 TCF4 JASPAR yes 70980921
chr3 50280560 50280569 SNAI2 JASPAR yes 2323363
chr3 50280560 50280569 SNAI2 JASPAR yes 70980922
chr3 50280560 50280580 TP63 JASPAR yes 2323364
chr3 50280560 50280580 TP63 JASPAR yes 70980923
chr3 50280561 50280566 USF2 TRANSFAC yes 2323365
chr3 50280561 50280566 USF2 TRANSFAC yes 70980924
chr3 50280561 50280579 TP53 JASPAR yes 2323366
chr3 50280561 50280579 TP53 JASPAR yes 70980925
chr3 50280562 50280577 TP53 JASPAR yes 2323367
chr3 50280562 50280577 TP53 JASPAR yes 70980926
chr3 50280572 50280580 GATA3 JASPAR yes 2323368
chr3 50280572 50280580 GATA3 JASPAR yes 70980927
SNP sites on vista40899[chr3:50280308-50280577]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 50280314 rs77677064 G A
POU1F1 POU2F1 POU2F2 POU3F1 POU3F2
6728252
Genes possibly regulated by vista40899[chr3:50280308-50280577]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 50192478 50226508 + SEMA3F ENSG00000001617.7 50192478 0.81 1.0 3694 12170
chr3 50229045 50233949 + GNAT1 ENSG00000114349.5 50229045 0.89 1.0 3695 48737
chr3 50263724 50296787 + GNAI2 ENSG00000114353.12 50263724 0.7 1.0 3696 83416
chr3 50316458 50325545 + LSMEM2 ENSG00000179564.3 50316458 0.97 1.0 3697 64119
chr3 50325163 50330349 - IFRD2 ENSG00000214706.6 50330349 0.69 1.0 3698 50228
chr3 50330262 50336899 - HYAL3 ENSG00000186792.11 50336899 0.77 0.99 3699 43678
chr3 50333833 50336852 - NAT6 ENSG00000243477.1 50336852 0.59 1.0 3700 43725
chr3 50337320 50349812 - HYAL1 ENSG00000114378.12 50349812 0.91 1.0 3701 30765
chr3 50355221 50360337 - HYAL2 ENSG00000068001.9 50360337 0.87 1.0 3702 20240
chr3 50357458 50365682 - TUSC2 ENSG00000114383.5 50365682 0.55 1.0 3703 14895
chr3 50367219 50378411 - RASSF1 ENSG00000068028.13 50378411 0.69 1.0 3704 2166
Expression level of Genes
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miRNAs possibly regulated by vista40899[chr3:50280308-50280577]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results