EnhancerDB
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  3. vista40901[chr3:50292420-50292632]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40901[chr3:50292420-50292632]
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Tissue distribution of vista40901
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Transcription factor that possibly regulate vista40901[chr3:50292420-50292632]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 50292419 50292431 TEAD1 JASPAR yes 2324572
chr3 50292419 50292431 TEAD1 JASPAR yes 70980951
chr3 50292420 50292431 FOXH1 JASPAR yes 2324573
chr3 50292420 50292431 FOXH1 JASPAR yes 70980952
chr3 50292421 50292431 TEAD1 JASPAR yes 2324574
chr3 50292421 50292431 TEAD4 JASPAR yes 2324575
chr3 50292421 50292431 TEAD1 JASPAR yes 70980953
chr3 50292421 50292431 TEAD4 JASPAR yes 70980954
chr3 50292422 50292430 TEAD3 JASPAR yes 2324576
chr3 50292422 50292430 TEAD3 JASPAR yes 70980955
chr3 50292424 50292440 ZNF143 JASPAR yes 2324577
chr3 50292424 50292440 ZNF143 JASPAR yes 70980956
chr3 50292456 50292475 CTCF JASPAR yes 2324578
chr3 50292456 50292475 CTCF JASPAR yes 70980957
chr3 50292457 50292472 ZIC3 JASPAR yes 2324579
chr3 50292457 50292472 ZIC4 JASPAR yes 2324580
chr3 50292457 50292472 ZIC3 JASPAR yes 70980958
chr3 50292457 50292472 ZIC4 JASPAR yes 70980959
chr3 50292458 50292472 ZIC1 JASPAR yes 2324581
chr3 50292458 50292472 ZIC1 JASPAR yes 70980960
chr3 50292465 50292472 SP1 TRANSFAC yes 2324582
chr3 50292465 50292472 SP1 TRANSFAC yes 70980961
chr3 50292465 50292475 SP1 JASPAR yes 2324583
chr3 50292465 50292475 SP1 JASPAR yes 70980962
chr3 50292466 50292474 SP1 TRANSFAC yes 2324584
chr3 50292466 50292474 SP1 TRANSFAC yes 70980963
chr3 50292466 50292475 SP1 TRANSFAC yes 2324585
chr3 50292466 50292475 SP1 TRANSFAC yes 70980964
chr3 50292467 50292472 SP1 TRANSFAC yes 2324586
chr3 50292467 50292472 SP1 TRANSFAC yes 70980965
chr3 50292468 50292473 SP1 TRANSFAC yes 2324587
chr3 50292468 50292473 SP1 TRANSFAC yes 70980966
chr3 50292468 50292474 SP1 TRANSFAC yes 2324588
chr3 50292468 50292474 SP1 TRANSFAC yes 70980967
chr3 50292471 50292481 SP1 JASPAR yes 2324589
chr3 50292471 50292481 SP1 JASPAR yes 70980968
chr3 50292472 50292476 LFA1 TRANSFAC yes 2324590
chr3 50292472 50292476 LFA1 TRANSFAC yes 70980969
chr3 50292476 50292486 TEAD1 JASPAR yes 2324591
chr3 50292476 50292486 TEAD1 JASPAR yes 70980970
chr3 50292480 50292490 GCM2 JASPAR yes 2324592
chr3 50292480 50292490 GCM2 JASPAR yes 70980971
chr3 50292486 50292490 ESR1 TRANSFAC yes 2324593
chr3 50292486 50292490 ESR1 TRANSFAC yes 70980972
chr3 50292496 50292507 NFE2 JASPAR yes 2324594
chr3 50292496 50292507 NFE2 JASPAR yes 70980973
chr3 50292498 50292504 ATF1 TRANSFAC yes 2324595
chr3 50292498 50292504 ATF1 TRANSFAC yes 70980974
chr3 50292498 50292505 XBP1 TRANSFAC yes 2324596
chr3 50292498 50292505 XBP1 TRANSFAC yes 70980975
chr3 50292509 50292515 MZF1 JASPAR yes 2324597
chr3 50292509 50292515 MZF1 JASPAR yes 70980976
chr3 50292515 50292536 IRF1 JASPAR yes 2324598
chr3 50292515 50292536 IRF1 JASPAR yes 70980977
chr3 50292517 50292528 FLI1 JASPAR yes 2324599
chr3 50292517 50292528 FLI1 JASPAR yes 70980978
chr3 50292518 50292528 GABPA JASPAR yes 2324600
chr3 50292518 50292528 GABPA JASPAR yes 70980979
chr3 50292518 50292530 ELF4 JASPAR yes 2324601
chr3 50292518 50292530 ELF4 JASPAR yes 70980980
chr3 50292518 50292531 ELF1 JASPAR yes 2324602
chr3 50292518 50292531 ELF1 JASPAR yes 70980981
chr3 50292518 50292532 SPI1 JASPAR yes 2324603
chr3 50292518 50292532 SPIC JASPAR yes 2324604
chr3 50292518 50292532 SPI1 JASPAR yes 70980982
chr3 50292518 50292532 SPIC JASPAR yes 70980983
chr3 50292519 50292527 EHF JASPAR yes 2324605
chr3 50292519 50292527 EHF JASPAR yes 70980984
chr3 50292550 50292565 JUND JASPAR yes 2324606
chr3 50292550 50292565 JUND JASPAR yes 70980985
chr3 50292551 50292564 JUN JASPAR yes 2324607
chr3 50292551 50292564 JUN JASPAR yes 70980986
chr3 50292558 50292562 YY1 TRANSFAC yes 2324608
chr3 50292558 50292562 YY1 TRANSFAC yes 70980987
chr3 50292573 50292594 REST JASPAR yes 2324609
chr3 50292573 50292594 REST JASPAR yes 70980988
chr3 50292574 50292593 REST JASPAR yes 2324610
chr3 50292574 50292593 REST JASPAR yes 70980989
chr3 50292590 50292603 SMAD2 JASPAR yes 2324611
chr3 50292590 50292603 SMAD2 JASPAR yes 70980990
chr3 50292591 50292596 SP1 TRANSFAC yes 2324612
chr3 50292591 50292596 SP1 TRANSFAC yes 70980991
chr3 50292594 50292609 HNF4G JASPAR yes 2324613
chr3 50292594 50292609 HNF4G JASPAR yes 70980992
chr3 50292595 50292609 NR2F1 JASPAR yes 2324614
chr3 50292595 50292609 NR2F1 JASPAR yes 70980993
chr3 50292595 50292610 HNF4A JASPAR yes 2324615
chr3 50292595 50292610 HNF4A JASPAR yes 70980994
chr3 50292619 50292634 TFAP2C JASPAR yes 2324616
chr3 50292619 50292634 TFAP2C JASPAR yes 70980995
chr3 50292625 50292637 TEAD1 JASPAR yes 2324617
chr3 50292625 50292637 TEAD1 JASPAR yes 70980996
chr3 50292628 50292643 STAT2 JASPAR yes 2324618
chr3 50292628 50292643 STAT2 JASPAR yes 70980997
SNP sites on vista40901[chr3:50292420-50292632]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 50292460 rs118188122 G A
CTCF ZIC1 ZIC3 ZIC4
6728329
Genes possibly regulated by vista40901[chr3:50292420-50292632]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 50192478 50226508 + SEMA3F ENSG00000001617.7 50192478 0.81 1.0 3694 58
chr3 50229045 50233949 + GNAT1 ENSG00000114349.5 50229045 0.89 1.0 3695 36625
chr3 50263724 50296787 + GNAI2 ENSG00000114353.12 50263724 0.7 1.0 3696 71304
chr3 50316458 50325545 + LSMEM2 ENSG00000179564.3 50316458 0.97 1.0 3697 76174
chr3 50325163 50330349 - IFRD2 ENSG00000214706.6 50330349 0.69 1.0 3698 62283
chr3 50330262 50336899 - HYAL3 ENSG00000186792.11 50336899 0.77 0.99 3699 55733
chr3 50333833 50336852 - NAT6 ENSG00000243477.1 50336852 0.59 1.0 3700 55780
chr3 50337320 50349812 - HYAL1 ENSG00000114378.12 50349812 0.91 1.0 3701 42820
chr3 50355221 50360337 - HYAL2 ENSG00000068001.9 50360337 0.87 1.0 3702 32295
chr3 50357458 50365682 - TUSC2 ENSG00000114383.5 50365682 0.55 1.0 3703 26950
chr3 50367219 50378411 - RASSF1 ENSG00000068028.13 50378411 0.69 1.0 3704 14221
chr3 50378541 50384283 - ZMYND10 ENSG00000004838.9 50384283 0.96 1.0 3705 8349
chr3 50384761 50388522 - NPRL2 ENSG00000114388.8 50388522 0.63 1.0 3706 4110
chr3 50388126 50395891 + CYB561D2 ENSG00000114395.6 50388126 0.63 1.0 3707 4506
chr3 50388323 50405354 + XXcos-LUCA11.5 ENSG00000272104.1 50388323 0.93 0.9 3708 4309
Expression level of Genes
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miRNAs possibly regulated by vista40901[chr3:50292420-50292632]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr3 50310706 50310726 + hsa-miR-6872-3p MIMAT0027645 50306602 0.05878370754823423 0.0 0.0 1172
Expression level of miRNAs
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