EnhancerDB
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  3. vista42060[chr3:119281143-119281770]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42060[chr3:119281143-119281770]
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Tissue distribution of vista42060
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Transcription factor that possibly regulate vista42060[chr3:119281143-119281770]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 119281044 119282070 POLR2A UCSC Txn Factor no Conserved 108529977
chr3 119281341 119281755 RELA UCSC Txn Factor no Conserved 108529978
chr3 119281410 119281865 EBF1 UCSC Txn Factor no Conserved 108529979
chr3 119281420 119281900 NFIC UCSC Txn Factor no Conserved 108529980
chr3 119281424 119281899 ATF2 UCSC Txn Factor no Conserved 108529981
chr3 119281429 119281861 RUNX3 UCSC Txn Factor no Conserved 108529982
chr3 119281556 119281788 MEF2A UCSC Txn Factor no Conserved 108529983
chr3 119281150 119281160 MEF2A JASPAR yes 71034323
chr3 119281157 119281161 YY1 TRANSFAC yes 71034324
chr3 119281167 119281173 TCF4 TRANSFAC yes 71034325
chr3 119281172 119281186 POU4F1 JASPAR yes 71034326
chr3 119281172 119281188 POU4F2 JASPAR yes 71034327
chr3 119281172 119281188 POU4F3 JASPAR yes 71034328
chr3 119281173 119281189 POU4F3 JASPAR yes 71034329
chr3 119281175 119281179 YY1 TRANSFAC yes 71034330
chr3 119281175 119281189 POU4F1 JASPAR yes 71034331
chr3 119281178 119281182 TEAD2 TRANSFAC yes 71034332
chr3 119281178 119281183 TBP TRANSFAC yes 71034333
chr3 119281178 119281184 TMF TRANSFAC yes 71034334
chr3 119281185 119281200 FOXP1 JASPAR yes 71034335
chr3 119281186 119281197 FOXA1 JASPAR yes 71034336
chr3 119281188 119281199 FOXP2 JASPAR yes 71034337
chr3 119281189 119281197 FOXO3 JASPAR yes 71034338
chr3 119281192 119281198 HiNF-A TRANSFAC yes 71034339
chr3 119281218 119281231 ELF1 JASPAR yes 71034340
chr3 119281221 119281231 GABPA JASPAR yes 71034341
chr3 119281221 119281232 FLI1 JASPAR yes 71034342
chr3 119281249 119281260 NFE2L2 JASPAR yes 71034343
chr3 119281251 119281257 SOX10 JASPAR yes 71034344
chr3 119281279 119281292 ZBED1 JASPAR yes 71034345
chr3 119281288 119281293 MYC TRANSFAC yes 71034346
chr3 119281292 119281302 MZF1 JASPAR yes 71034347
chr3 119281296 119281301 ETS2 TRANSFAC yes 71034348
chr3 119281305 119281322 RARA JASPAR yes 71034349
chr3 119281309 119281315 TCF4 TRANSFAC yes 71034350
chr3 119281316 119281328 INSM1 JASPAR yes 71034351
chr3 119281321 119281339 NR3C1 JASPAR yes 71034352
chr3 119281351 119281363 YY1 JASPAR yes 71034353
chr3 119281366 119281379 NR2F1 JASPAR yes 71034354
chr3 119281368 119281379 ESRRA JASPAR yes 71034355
chr3 119281368 119281379 ESRRB JASPAR yes 71034356
chr3 119281369 119281377 NR4A2 JASPAR yes 71034357
chr3 119281370 119281380 RORA JASPAR yes 71034358
chr3 119281375 119281395 PPARG JASPAR yes 71034359
chr3 119281380 119281390 NKX2-3 JASPAR yes 71034360
chr3 119281381 119281390 NKX2-8 JASPAR yes 71034361
chr3 119281414 119281421 JUN TRANSFAC yes 71034362
chr3 119281417 119281435 RARA JASPAR yes 71034363
chr3 119281423 119281431 EHF JASPAR yes 71034364
chr3 119281431 119281441 GABPA JASPAR yes 71034365
chr3 119281433 119281439 ETS1 JASPAR yes 71034366
chr3 119281433 119281439 SPI1 JASPAR yes 71034367
chr3 119281445 119281451 ZNF354C JASPAR yes 71034368
chr3 119281452 119281458 MAZ TRANSFAC yes 71034369
chr3 119281456 119281475 REST JASPAR yes 71034370
chr3 119281473 119281494 REST JASPAR yes 71034371
chr3 119281488 119281496 MEIS2 JASPAR yes 71034372
chr3 119281488 119281496 MEIS3 JASPAR yes 71034373
chr3 119281489 119281493 NFE TRANSFAC yes 71034374
chr3 119281493 119281497 YY1 TRANSFAC yes 71034375
chr3 119281522 119281543 REST JASPAR yes 71034376
chr3 119281523 119281542 REST JASPAR yes 71034377
chr3 119281533 119281548 STAT1 JASPAR yes 71034378
chr3 119281535 119281546 STAT1 JASPAR yes 71034379
chr3 119281535 119281546 STAT3 JASPAR yes 71034380
chr3 119281539 119281552 NFKB1 JASPAR yes 71034381
chr3 119281539 119281552 NFKB2 JASPAR yes 71034382
chr3 119281540 119281551 NFKB1 JASPAR yes 71034383
chr3 119281541 119281551 NFKB1 JASPAR yes 71034384
chr3 119281541 119281551 RELA JASPAR yes 71034385
chr3 119281541 119281551 REL JASPAR yes 71034386
chr3 119281566 119281585 RFX2 JASPAR yes 71034387
chr3 119281570 119281586 RFX2 JASPAR yes 71034388
chr3 119281570 119281586 RFX3 JASPAR yes 71034389
chr3 119281570 119281586 RFX5 JASPAR yes 71034390
chr3 119281571 119281580 NFIX JASPAR yes 71034391
chr3 119281571 119281581 NFIA JASPAR yes 71034392
chr3 119281573 119281579 NFIC JASPAR yes 71034393
chr3 119281574 119281588 FOXF2 JASPAR yes 71034394
chr3 119281574 119281589 FOXP1 JASPAR yes 71034395
chr3 119281575 119281586 FOXA1 JASPAR yes 71034396
chr3 119281576 119281587 FOXC1 JASPAR yes 71034397
chr3 119281576 119281588 FOXC2 JASPAR yes 71034398
chr3 119281577 119281588 FOXP2 JASPAR yes 71034399
chr3 119281579 119281586 FOXD2 JASPAR yes 71034400
chr3 119281579 119281586 FOXI1 JASPAR yes 71034401
chr3 119281579 119281586 FOXL1 JASPAR yes 71034402
chr3 119281579 119281586 FOXO4 JASPAR yes 71034403
chr3 119281579 119281586 FOXO6 JASPAR yes 71034404
chr3 119281579 119281586 FOXP3 JASPAR yes 71034405
chr3 119281579 119281587 FOXD1 JASPAR yes 71034406
chr3 119281579 119281587 FOXG1 JASPAR yes 71034407
chr3 119281579 119281587 FOXO3 JASPAR yes 71034408
chr3 119281579 119281588 SRY JASPAR yes 71034409
chr3 119281584 119281599 SCRT1 JASPAR yes 71034410
chr3 119281585 119281595 MSC JASPAR yes 71034411
chr3 119281585 119281597 GRHL1 JASPAR yes 71034412
chr3 119281586 119281599 SCRT2 JASPAR yes 71034413
chr3 119281588 119281594 PTF TRANSFAC yes 71034414
chr3 119281642 119281657 ZBTB33 JASPAR yes 71034415
chr3 119281650 119281668 RARA JASPAR yes 71034416
chr3 119281660 119281675 MEF2C JASPAR yes 71034417
chr3 119281661 119281673 MEF2D JASPAR yes 71034418
chr3 119281663 119281667 YY1 TRANSFAC yes 71034419
chr3 119281672 119281686 ATF7 JASPAR yes 71034420
chr3 119281672 119281686 BATF3 JASPAR yes 71034421
chr3 119281673 119281685 JDP2 JASPAR yes 71034422
chr3 119281686 119281690 LFA1 TRANSFAC yes 71034423
chr3 119281695 119281699 TEAD2 TRANSFAC yes 71034424
chr3 119281717 119281721 LFA1 TRANSFAC yes 71034425
chr3 119281718 119281728 TFAP4 JASPAR yes 71034426
chr3 119281750 119281756 MZF1 JASPAR yes 71034427
SNP sites on vista42060[chr3:119281143-119281770]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 119281166 rs376562061 C A
POLR2A
6978662
chr3 119281233 rs115485168 T C
POLR2A
6978663
chr3 119281241 rs75264238 G A
POLR2A
6978664
chr3 119281438 rs112349376 C G,T
ATF2 EBF1 ETS1 GABPA NFIC POLR2A RELA RUNX3 SPI1
6978665
chr3 119281590 rs885654 C A
ATF2 EBF1 GRHL1 MEF2A MSC NFIC POLR2A PTF RELA RUNX3 SCRT1 SCRT2
6978666
chr3 119281636 rs867234 G C
ATF2 EBF1 MEF2A NFIC POLR2A RELA RUNX3
6978667
chr3 119281747 rs369065909 G A
ATF2 EBF1 MEF2A NFIC POLR2A RELA RUNX3
6978668
chr3 119281748 rs556302872 T C
ATF2 EBF1 MEF2A NFIC POLR2A RELA RUNX3
6978669
Genes possibly regulated by vista42060[chr3:119281143-119281770]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 119148347 119187677 - TMEM39A ENSG00000176142.8 119187677 0.59 1.0 3970 6534
chr3 119187785 119213555 + POGLUT1 ENSG00000163389.6 119187785 0.6 0.99 3971 6642
chr3 119217379 119243937 + TIMMDC1 ENSG00000113845.5 119217379 0.58 0.99 3972 36236
chr3 119243140 119278449 - CD80 ENSG00000121594.7 119278449 0.98 1.0 3973 97306
chr3 119298115 119308792 + ADPRH ENSG00000144843.7 119298115 0.73 0.99 3974 83655
chr3 119316689 119348658 + PLA1A ENSG00000144837.4 119316689 0.91 1.0 3975 65081
Expression level of Genes
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miRNAs possibly regulated by vista42060[chr3:119281143-119281770]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results