EnhancerDB
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  3. vista42274[chr3:125235229-125235600]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42274[chr3:125235229-125235600]
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Tissue distribution of vista42274
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Transcription factor that possibly regulate vista42274[chr3:125235229-125235600]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 125235413 125235714 RUNX3 UCSC Txn Factor no Conserved 108530167
chr3 125235230 125235236 TBP TRANSFAC yes 71044592
chr3 125235280 125235291 TBX2 JASPAR yes 71044593
chr3 125235312 125235320 E2F1 JASPAR yes 71044594
chr3 125235346 125235351 GATA2 JASPAR yes 71044595
chr3 125235347 125235357 ESX1 JASPAR yes 71044596
chr3 125235347 125235357 GBX1 JASPAR yes 71044597
chr3 125235347 125235357 GBX2 JASPAR yes 71044598
chr3 125235347 125235357 HESX1 JASPAR yes 71044599
chr3 125235347 125235357 LBX2 JASPAR yes 71044600
chr3 125235347 125235357 LHX2 JASPAR yes 71044601
chr3 125235347 125235357 RAX JASPAR yes 71044602
chr3 125235348 125235356 DLX6 JASPAR yes 71044603
chr3 125235348 125235356 MSX2 JASPAR yes 71044604
chr3 125235356 125235360 TEAD2 TRANSFAC yes 71044605
chr3 125235356 125235361 TBP TRANSFAC yes 71044606
chr3 125235356 125235362 TMF TRANSFAC yes 71044607
chr3 125235362 125235377 PRDM1 JASPAR yes 71044608
chr3 125235365 125235376 E2F6 JASPAR yes 71044609
chr3 125235406 125235410 LFA1 TRANSFAC yes 71044610
chr3 125235427 125235448 LUN1 TRANSFAC yes 71044611
chr3 125235452 125235457 SP1 TRANSFAC yes 71044612
chr3 125235457 125235463 ZNF354C JASPAR yes 71044613
chr3 125235466 125235479 NR2F1 JASPAR yes 71044614
chr3 125235467 125235475 CREB1 JASPAR yes 71044615
chr3 125235468 125235487 PAX5 JASPAR yes 71044616
chr3 125235470 125235474 ESR1 TRANSFAC yes 71044617
chr3 125235496 125235508 YY1 JASPAR yes 71044618
chr3 125235500 125235511 CEBPB JASPAR yes 71044619
chr3 125235501 125235514 NFKB1 JASPAR yes 71044620
chr3 125235501 125235514 NFKB2 JASPAR yes 71044621
chr3 125235517 125235532 MEF2C JASPAR yes 71044622
chr3 125235518 125235533 MEF2A JASPAR yes 71044623
chr3 125235519 125235531 MEF2A JASPAR yes 71044624
chr3 125235519 125235531 MEF2B JASPAR yes 71044625
chr3 125235519 125235531 MEF2D JASPAR yes 71044626
chr3 125235538 125235547 SNAI2 JASPAR yes 71044627
chr3 125235538 125235548 ID4 JASPAR yes 71044628
chr3 125235540 125235549 ZEB1 JASPAR yes 71044629
chr3 125235549 125235559 MAX JASPAR yes 71044630
chr3 125235549 125235560 USF2 JASPAR yes 71044631
chr3 125235549 125235561 HES5 JASPAR yes 71044632
chr3 125235549 125235561 HES7 JASPAR yes 71044633
chr3 125235561 125235576 RUNX2 JASPAR yes 71044634
chr3 125235562 125235565 MYB TRANSFAC yes 71044635
chr3 125235562 125235571 RUNX2 JASPAR yes 71044636
chr3 125235562 125235573 RUNX1 JASPAR yes 71044637
SNP sites on vista42274[chr3:125235229-125235600]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 125235372 rs78492240 C T
E2F6 PRDM1
7003821
chr3 125235427 rs566080958 G A
LUN1 RUNX3
7003822
chr3 125235505 rs535063867 T C
CEBPB NFKB1 NFKB2 RUNX3 YY1
7003823
Genes possibly regulated by vista42274[chr3:125235229-125235600]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 125165495 125239041 - SNX4 ENSG00000114520.6 125239041 0.7 0.97 4026 96559
chr3 125247702 125313934 - OSBPL11 ENSG00000144909.7 125313934 0.66 0.99 4027 21666
Expression level of Genes
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miRNAs possibly regulated by vista42274[chr3:125235229-125235600]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results