EnhancerDB
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  3. vista42280[chr3:125709142-125709481]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42280[chr3:125709142-125709481]
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Tissue distribution of vista42280
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Transcription factor that possibly regulate vista42280[chr3:125709142-125709481]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 125709129 125709913 POLR2A UCSC Txn Factor no Conserved 108530171
chr3 125709193 125709641 GABPA UCSC Txn Factor no Conserved 108530172
chr3 125709141 125709161 RREB1 JASPAR yes 5465844
chr3 125709141 125709161 RREB1 JASPAR yes 71044878
chr3 125709171 125709174 MYB TRANSFAC yes 5465845
chr3 125709171 125709174 MYB TRANSFAC yes 71044879
chr3 125709191 125709196 SP1 TRANSFAC yes 5465846
chr3 125709191 125709196 SP1 TRANSFAC yes 71044880
chr3 125709191 125709197 SP1 TRANSFAC yes 5465847
chr3 125709191 125709197 SP1 TRANSFAC yes 71044881
chr3 125709194 125709204 SP1 JASPAR yes 5465848
chr3 125709194 125709204 SP1 JASPAR yes 71044882
chr3 125709199 125709208 SP1 TRANSFAC yes 5465849
chr3 125709199 125709208 SP1 TRANSFAC yes 71044883
chr3 125709200 125709206 SP1 TRANSFAC yes 5465850
chr3 125709200 125709206 SP1 TRANSFAC yes 71044884
chr3 125709200 125709210 SP1 JASPAR yes 5465851
chr3 125709200 125709210 SP1 JASPAR yes 71044885
chr3 125709201 125709208 SP1 TRANSFAC yes 5465852
chr3 125709201 125709208 SP1 TRANSFAC yes 71044886
chr3 125709202 125709207 SP1 TRANSFAC yes 5465853
chr3 125709202 125709207 SP1 TRANSFAC yes 71044887
chr3 125709202 125709208 SP1 TRANSFAC yes 5465854
chr3 125709202 125709208 SP1 TRANSFAC yes 71044888
chr3 125709219 125709227 WT1 TRANSFAC yes 5465855
chr3 125709219 125709227 WT1 TRANSFAC yes 71044889
chr3 125709221 125709230 SP1 TRANSFAC yes 5465856
chr3 125709221 125709230 SP1 TRANSFAC yes 71044890
chr3 125709222 125709228 SP1 TRANSFAC yes 5465857
chr3 125709222 125709228 SP1 TRANSFAC yes 71044891
chr3 125709222 125709232 SP1 JASPAR yes 5465858
chr3 125709222 125709232 SP1 JASPAR yes 71044892
chr3 125709223 125709230 SP1 TRANSFAC yes 5465859
chr3 125709223 125709230 SP1 TRANSFAC yes 71044893
chr3 125709224 125709229 SP1 TRANSFAC yes 5465860
chr3 125709224 125709229 SP1 TRANSFAC yes 71044894
chr3 125709224 125709230 SP1 TRANSFAC yes 5465861
chr3 125709224 125709230 SP1 TRANSFAC yes 71044895
chr3 125709280 125709285 ETS2 TRANSFAC yes 5465862
chr3 125709280 125709285 ETS2 TRANSFAC yes 71044896
chr3 125709282 125709303 ZNF263 JASPAR yes 5465863
chr3 125709282 125709303 ZNF263 JASPAR yes 71044897
chr3 125709288 125709293 ETS2 TRANSFAC yes 5465864
chr3 125709288 125709293 ETS2 TRANSFAC yes 71044898
chr3 125709296 125709302 MAZ TRANSFAC yes 5465865
chr3 125709296 125709302 MAZ TRANSFAC yes 71044899
chr3 125709334 125709355 ZNF263 JASPAR yes 5465866
chr3 125709334 125709355 ZNF263 JASPAR yes 71044900
chr3 125709336 125709351 PRDM1 JASPAR yes 5465867
chr3 125709336 125709351 PRDM1 JASPAR yes 71044901
chr3 125709396 125709407 STAT3 JASPAR yes 5465868
chr3 125709396 125709407 STAT3 JASPAR yes 71044902
chr3 125709397 125709403 ETS1 JASPAR yes 5465869
chr3 125709397 125709403 ETS1 JASPAR yes 71044903
chr3 125709397 125709409 ELF1 JASPAR yes 5465870
chr3 125709397 125709409 ELF4 JASPAR yes 5465871
chr3 125709397 125709409 ELF1 JASPAR yes 71044904
chr3 125709397 125709409 ELF4 JASPAR yes 71044905
chr3 125709399 125709408 ELK4 JASPAR yes 5465872
chr3 125709399 125709408 ELK4 JASPAR yes 71044906
chr3 125709399 125709409 ELK1 JASPAR yes 5465873
chr3 125709399 125709409 ELK3 JASPAR yes 5465874
chr3 125709399 125709409 ERG JASPAR yes 5465875
chr3 125709399 125709409 ETS1 JASPAR yes 5465876
chr3 125709399 125709409 ETV1 JASPAR yes 5465877
chr3 125709399 125709409 ETV4 JASPAR yes 5465878
chr3 125709399 125709409 ETV5 JASPAR yes 5465879
chr3 125709399 125709409 FEV JASPAR yes 5465880
chr3 125709399 125709409 FLI1 JASPAR yes 5465881
chr3 125709399 125709409 ELK1 JASPAR yes 71044907
chr3 125709399 125709409 ELK3 JASPAR yes 71044908
chr3 125709399 125709409 ERG JASPAR yes 71044909
chr3 125709399 125709409 ETS1 JASPAR yes 71044910
chr3 125709399 125709409 ETV1 JASPAR yes 71044911
chr3 125709399 125709409 ETV4 JASPAR yes 71044912
chr3 125709399 125709409 ETV5 JASPAR yes 71044913
chr3 125709399 125709409 FEV JASPAR yes 71044914
chr3 125709399 125709409 FLI1 JASPAR yes 71044915
chr3 125709399 125709410 ELK4 JASPAR yes 5465882
chr3 125709399 125709410 FLI1 JASPAR yes 5465883
chr3 125709399 125709410 ELK4 JASPAR yes 71044916
chr3 125709399 125709410 FLI1 JASPAR yes 71044917
chr3 125709401 125709407 ETS1 JASPAR yes 5465884
chr3 125709401 125709407 SPI1 JASPAR yes 5465885
chr3 125709401 125709407 ETS1 JASPAR yes 71044918
chr3 125709401 125709407 SPI1 JASPAR yes 71044919
chr3 125709401 125709415 SPI1 JASPAR yes 5465886
chr3 125709401 125709415 SPI1 JASPAR yes 71044920
chr3 125709404 125709415 ELF5 JASPAR yes 5465887
chr3 125709404 125709415 ETV2 JASPAR yes 5465888
chr3 125709404 125709415 ELF5 JASPAR yes 71044921
chr3 125709404 125709415 ETV2 JASPAR yes 71044922
chr3 125709405 125709415 ETV5 JASPAR yes 5465889
chr3 125709405 125709415 ETV6 JASPAR yes 5465890
chr3 125709405 125709415 GABPA JASPAR yes 5465891
chr3 125709405 125709415 ETV5 JASPAR yes 71044923
chr3 125709405 125709415 ETV6 JASPAR yes 71044924
chr3 125709405 125709415 GABPA JASPAR yes 71044925
chr3 125709407 125709413 ETS1 JASPAR yes 5465892
chr3 125709407 125709413 SPI1 JASPAR yes 5465893
chr3 125709407 125709413 ETS1 JASPAR yes 71044926
chr3 125709407 125709413 SPI1 JASPAR yes 71044927
chr3 125709413 125709425 ZBTB7B JASPAR yes 5465894
chr3 125709413 125709425 ZBTB7B JASPAR yes 71044928
chr3 125709417 125709424 SP1 TRANSFAC yes 5465895
chr3 125709417 125709424 SP1 TRANSFAC yes 71044929
chr3 125709417 125709427 SP1 JASPAR yes 5465896
chr3 125709417 125709427 SP1 JASPAR yes 71044930
chr3 125709418 125709426 SP1 TRANSFAC yes 5465897
chr3 125709418 125709426 SP1 TRANSFAC yes 71044931
chr3 125709419 125709424 SP1 TRANSFAC yes 5465898
chr3 125709419 125709424 SP1 TRANSFAC yes 71044932
chr3 125709420 125709425 SP1 TRANSFAC yes 5465899
chr3 125709420 125709425 SP1 TRANSFAC yes 71044933
chr3 125709432 125709452 ESR1 JASPAR yes 5465900
chr3 125709432 125709452 ESR1 JASPAR yes 71044934
chr3 125709433 125709437 H4TF2 TRANSFAC yes 5465901
chr3 125709433 125709437 H4TF2 TRANSFAC yes 71044935
SNP sites on vista42280[chr3:125709142-125709481]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 125709213 rs12636284 C T
GABPA POLR2A
7006506
chr3 125709267 rs528377346 G A
GABPA POLR2A
7006507
chr3 125709279 rs373925825 A ACGGGAAGC
GABPA POLR2A
7006508
chr3 125709335 rs551149552 A G
GABPA POLR2A ZNF263
7006509
chr3 125709351 rs6764694 T C
GABPA POLR2A PRDM1 ZNF263
7006510
chr3 125709366 rs35120077 G A
GABPA POLR2A
7006511
chr3 125709388 rs144871794 G A
GABPA POLR2A
7006512
chr3 125709397 rs567368925 C T
ELF1 ELF4 ETS1 GABPA POLR2A STAT3
7006513
chr3 125709401 rs36050131 C A
ELF1 ELF4 ELK1 ELK3 ELK4 ERG ETS1 ETV1 ETV4 ETV5 FEV FLI1 GABPA POLR2A SPI1 STAT3
7006514
chr3 125709474 rs76931697 C T
GABPA POLR2A
7006515
chr3 125709480 rs184037605 C T
GABPA POLR2A
7006516
Genes possibly regulated by vista42280[chr3:125709142-125709481]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 125648118 125655882 - ALG1L ENSG00000189366.5 125655882 0.78 1.0 4028 46740
chr3 125687987 125702297 + ROPN1B ENSG00000114547.5 125687987 0.87 1.0 4029 78845
Expression level of Genes
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miRNAs possibly regulated by vista42280[chr3:125709142-125709481]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results