EnhancerDB
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  3. vista42308[chr3:126939428-126939807]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42308[chr3:126939428-126939807]
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Tissue distribution of vista42308
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Transcription factor that possibly regulate vista42308[chr3:126939428-126939807]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 126939427 126939759 RUNX3 UCSC Txn Factor no Conserved 108530224
chr3 126939420 126939430 MSC JASPAR yes 5521242
chr3 126939420 126939430 MSC JASPAR yes 71046068
chr3 126939449 126939453 NFE TRANSFAC yes 5521243
chr3 126939449 126939453 NFE TRANSFAC yes 71046069
chr3 126939455 126939465 HOXB13 JASPAR yes 5521244
chr3 126939455 126939465 HOXB13 JASPAR yes 71046070
chr3 126939461 126939473 PBX1 JASPAR yes 5521245
chr3 126939461 126939473 PBX1 JASPAR yes 71046071
chr3 126939479 126939490 FOSL2 JASPAR yes 5521246
chr3 126939479 126939490 JUNB JASPAR yes 5521247
chr3 126939479 126939490 FOSL2 JASPAR yes 71046072
chr3 126939479 126939490 JUNB JASPAR yes 71046073
chr3 126939480 126939491 FOS JASPAR yes 5521248
chr3 126939480 126939491 FOSL1 JASPAR yes 5521249
chr3 126939480 126939491 JUND JASPAR yes 5521250
chr3 126939480 126939491 FOS JASPAR yes 71046074
chr3 126939480 126939491 FOSL1 JASPAR yes 71046075
chr3 126939480 126939491 JUND JASPAR yes 71046076
chr3 126939481 126939490 JDP2 JASPAR yes 5521251
chr3 126939481 126939490 JDP2 JASPAR yes 71046077
chr3 126939482 126939493 BATF JASPAR yes 5521252
chr3 126939482 126939493 BATF JASPAR yes 71046078
chr3 126939522 126939527 TFAP2A TRANSFAC yes 5521253
chr3 126939522 126939527 TFAP2A TRANSFAC yes 71046079
chr3 126939522 126939528 MZF1 JASPAR yes 5521254
chr3 126939522 126939528 MZF1 JASPAR yes 71046080
chr3 126939522 126939535 NFKB2 JASPAR yes 5521255
chr3 126939522 126939535 NFKB2 JASPAR yes 71046081
chr3 126939523 126939533 NFKB1 JASPAR yes 5521256
chr3 126939523 126939533 REL JASPAR yes 5521257
chr3 126939523 126939533 NFKB1 JASPAR yes 71046082
chr3 126939523 126939533 REL JASPAR yes 71046083
chr3 126939523 126939534 NFKB1 JASPAR yes 5521258
chr3 126939523 126939534 NFKB1 JASPAR yes 71046084
chr3 126939523 126939536 NFKB2 JASPAR yes 5521259
chr3 126939523 126939536 NFKB2 JASPAR yes 71046085
chr3 126939524 126939534 NFKB1 JASPAR yes 5521260
chr3 126939524 126939534 RELA JASPAR yes 5521261
chr3 126939524 126939534 REL JASPAR yes 5521262
chr3 126939524 126939534 NFKB1 JASPAR yes 71046086
chr3 126939524 126939534 RELA JASPAR yes 71046087
chr3 126939524 126939534 REL JASPAR yes 71046088
chr3 126939524 126939535 NFKB1 JASPAR yes 5521263
chr3 126939524 126939535 NFKB1 JASPAR yes 71046089
chr3 126939530 126939545 TFAP2A JASPAR yes 5521264
chr3 126939530 126939545 TFAP2A JASPAR yes 71046090
chr3 126939532 126939541 TFAP2A JASPAR yes 5521265
chr3 126939532 126939541 TFAP2A JASPAR yes 71046091
chr3 126939536 126939546 NFKB1 JASPAR yes 5521266
chr3 126939536 126939546 NFKB1 JASPAR yes 71046092
chr3 126939536 126939547 NFKB1 JASPAR yes 5521267
chr3 126939536 126939547 NFKB1 JASPAR yes 71046093
chr3 126939548 126939563 MEF2A JASPAR yes 5521268
chr3 126939548 126939563 MEF2A JASPAR yes 71046094
chr3 126939550 126939562 MEF2A JASPAR yes 5521269
chr3 126939550 126939562 MEF2B JASPAR yes 5521270
chr3 126939550 126939562 MEF2D JASPAR yes 5521271
chr3 126939550 126939562 MEF2A JASPAR yes 71046095
chr3 126939550 126939562 MEF2B JASPAR yes 71046096
chr3 126939550 126939562 MEF2D JASPAR yes 71046097
chr3 126939552 126939556 YY1 TRANSFAC yes 5521272
chr3 126939552 126939556 YY1 TRANSFAC yes 71046098
chr3 126939602 126939613 ESRRA JASPAR yes 5521273
chr3 126939602 126939613 ESRRB JASPAR yes 5521274
chr3 126939602 126939613 ESRRA JASPAR yes 71046099
chr3 126939602 126939613 ESRRB JASPAR yes 71046100
chr3 126939616 126939621 MYC TRANSFAC yes 5521275
chr3 126939616 126939621 MYC TRANSFAC yes 71046101
chr3 126939619 126939638 REST JASPAR yes 5521276
chr3 126939619 126939638 REST JASPAR yes 71046102
chr3 126939622 126939633 RUNX1 JASPAR yes 5521277
chr3 126939622 126939633 RUNX1 JASPAR yes 71046103
chr3 126939692 126939707 SCRT1 JASPAR yes 5521278
chr3 126939692 126939707 SCRT1 JASPAR yes 71046104
chr3 126939701 126939711 HOXA13 JASPAR yes 5521279
chr3 126939701 126939711 HOXB13 JASPAR yes 5521280
chr3 126939701 126939711 HOXD13 JASPAR yes 5521281
chr3 126939701 126939711 HOXA13 JASPAR yes 71046105
chr3 126939701 126939711 HOXB13 JASPAR yes 71046106
chr3 126939701 126939711 HOXD13 JASPAR yes 71046107
chr3 126939702 126939711 CDX1 JASPAR yes 5521282
chr3 126939702 126939711 CDX1 JASPAR yes 71046108
chr3 126939702 126939713 CDX2 JASPAR yes 5521283
chr3 126939702 126939713 CDX2 JASPAR yes 71046109
chr3 126939711 126939716 ATF1 TRANSFAC yes 5521284
chr3 126939711 126939716 ATF1 TRANSFAC yes 71046110
chr3 126939715 126939719 YY1 TRANSFAC yes 5521285
chr3 126939715 126939719 YY1 TRANSFAC yes 71046111
chr3 126939716 126939728 HLF JASPAR yes 5521286
chr3 126939716 126939728 HLF JASPAR yes 71046112
chr3 126939717 126939730 POU3F3 JASPAR yes 5521287
chr3 126939717 126939730 POU3F3 JASPAR yes 71046113
chr3 126939718 126939729 NFIL3 JASPAR yes 5521288
chr3 126939718 126939729 NFIL3 JASPAR yes 71046114
chr3 126939718 126939730 POU3F1 JASPAR yes 5521289
chr3 126939718 126939730 POU3F2 JASPAR yes 5521290
chr3 126939718 126939730 POU3F1 JASPAR yes 71046115
chr3 126939718 126939730 POU3F2 JASPAR yes 71046116
chr3 126939731 126939743 BHLHE23 JASPAR yes 5521291
chr3 126939731 126939743 BHLHE23 JASPAR yes 71046117
chr3 126939732 126939742 BHLHE22 JASPAR yes 5521292
chr3 126939732 126939742 NEUROD2 JASPAR yes 5521293
chr3 126939732 126939742 OLIG1 JASPAR yes 5521294
chr3 126939732 126939742 OLIG2 JASPAR yes 5521295
chr3 126939732 126939742 OLIG3 JASPAR yes 5521296
chr3 126939732 126939742 BHLHE22 JASPAR yes 71046118
chr3 126939732 126939742 NEUROD2 JASPAR yes 71046119
chr3 126939732 126939742 OLIG1 JASPAR yes 71046120
chr3 126939732 126939742 OLIG2 JASPAR yes 71046121
chr3 126939732 126939742 OLIG3 JASPAR yes 71046122
chr3 126939732 126939745 POU2F2 JASPAR yes 5521297
chr3 126939732 126939745 POU2F2 JASPAR yes 71046123
chr3 126939742 126939748 TCF4 TRANSFAC yes 5521298
chr3 126939742 126939748 TCF4 TRANSFAC yes 71046124
chr3 126939751 126939755 YY1 TRANSFAC yes 5521299
chr3 126939751 126939755 YY1 TRANSFAC yes 71046125
chr3 126939769 126939782 POU2F2 JASPAR yes 5521300
chr3 126939769 126939782 POU2F2 JASPAR yes 71046126
chr3 126939771 126939787 POU4F2 JASPAR yes 5521301
chr3 126939771 126939787 POU4F2 JASPAR yes 71046127
chr3 126939773 126939785 SRF JASPAR yes 5521302
chr3 126939773 126939785 SRF JASPAR yes 71046128
chr3 126939776 126939780 YY1 TRANSFAC yes 5521303
chr3 126939776 126939780 YY1 TRANSFAC yes 71046129
chr3 126939780 126939785 TFAP2A TRANSFAC yes 5521304
chr3 126939780 126939785 TFAP2A TRANSFAC yes 71046130
chr3 126939780 126939786 MZF1 JASPAR yes 5521305
chr3 126939780 126939786 MZF1 JASPAR yes 71046131
SNP sites on vista42308[chr3:126939428-126939807]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 126939651 rs559735878 C G
RUNX3
7012465
chr3 126939659 rs78201543 C T
RUNX3
7012466
chr3 126939660 rs548743667 G A
RUNX3
7012467
chr3 126939696 rs1032046 C A
RUNX3 SCRT1
7012468
chr3 126939714 rs147977751 G A
ATF1 RUNX3
7012469
Genes possibly regulated by vista42308[chr3:126939428-126939807]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 126911974 126917025 + C3orf56 ENSG00000214324.1 126911974 0.0 0.0 4042 72546
Expression level of Genes
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miRNAs possibly regulated by vista42308[chr3:126939428-126939807]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr3 127294110 127294131 - hsa-miR-6825-3p MIMAT0027551 127309575 0.014110065362702005 0.916667 0.0 1196
Expression level of miRNAs
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