EnhancerDB
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  3. vista42339[chr3:127553991-127554142]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42339[chr3:127553991-127554142]
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Tissue distribution of vista42339
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Transcription factor that possibly regulate vista42339[chr3:127553991-127554142]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 127553992 127554002 MSC JASPAR yes 5553242
chr3 127553992 127554002 MSC JASPAR yes 71047953
chr3 127553996 127554008 MEF2D JASPAR yes 5553243
chr3 127553996 127554008 MEF2D JASPAR yes 71047954
chr3 127553998 127554002 YY1 TRANSFAC yes 5553244
chr3 127553998 127554002 YY1 TRANSFAC yes 71047955
chr3 127554012 127554016 YY1 TRANSFAC yes 5553245
chr3 127554012 127554016 YY1 TRANSFAC yes 71047956
chr3 127554018 127554033 HNF4G JASPAR yes 5553246
chr3 127554018 127554033 HNF4G JASPAR yes 71047957
chr3 127554019 127554034 HNF4A JASPAR yes 5553247
chr3 127554019 127554034 HNF4A JASPAR yes 71047958
chr3 127554041 127554052 NFKB1 JASPAR yes 5553248
chr3 127554041 127554052 NFKB1 JASPAR yes 71047959
chr3 127554045 127554063 NR3C1 JASPAR yes 5553249
chr3 127554045 127554063 NR3C1 JASPAR yes 71047960
chr3 127554050 127554054 YY1 TRANSFAC yes 5553250
chr3 127554050 127554054 YY1 TRANSFAC yes 71047961
chr3 127554053 127554060 NKX3-1 JASPAR yes 5553251
chr3 127554053 127554060 NKX3-1 JASPAR yes 71047962
chr3 127554072 127554087 LEF1 JASPAR yes 5553252
chr3 127554072 127554087 LEF1 JASPAR yes 71047963
chr3 127554074 127554087 POU2F2 JASPAR yes 5553253
chr3 127554074 127554087 POU2F2 JASPAR yes 71047964
chr3 127554087 127554098 E2F4 JASPAR yes 5553254
chr3 127554087 127554098 E2F6 JASPAR yes 5553255
chr3 127554087 127554098 E2F4 JASPAR yes 71047965
chr3 127554087 127554098 E2F6 JASPAR yes 71047966
chr3 127554088 127554099 E2F1 JASPAR yes 5553256
chr3 127554088 127554099 E2F1 JASPAR yes 71047967
chr3 127554088 127554100 E2F8 JASPAR yes 5553257
chr3 127554088 127554100 E2F8 JASPAR yes 71047968
chr3 127554092 127554097 SP1 TRANSFAC yes 5553258
chr3 127554092 127554097 SP1 TRANSFAC yes 71047969
chr3 127554102 127554108 YY1 JASPAR yes 5553259
chr3 127554102 127554108 YY1 JASPAR yes 71047970
chr3 127554119 127554123 YY1 TRANSFAC yes 5553260
chr3 127554119 127554123 YY1 TRANSFAC yes 71047971
chr3 127554120 127554130 NFIA JASPAR yes 5553261
chr3 127554120 127554130 NFIA JASPAR yes 71047972
chr3 127554121 127554130 NFIX JASPAR yes 5553262
chr3 127554121 127554130 NFIX JASPAR yes 71047973
chr3 127554122 127554128 NFIC JASPAR yes 5553263
chr3 127554122 127554128 NFIC JASPAR yes 71047974
chr3 127554133 127554151 MAFF JASPAR yes 5553264
chr3 127554133 127554151 MAFF JASPAR yes 71047975
chr3 127554134 127554149 MAFK JASPAR yes 5553265
chr3 127554134 127554149 MAFK JASPAR yes 71047976
chr3 127554138 127554149 NRL JASPAR yes 5553266
chr3 127554138 127554149 NRL JASPAR yes 71047977
chr3 127554140 127554155 HNF1A JASPAR yes 5553267
chr3 127554140 127554155 HNF1A JASPAR yes 71047978
chr3 127554141 127554150 VENTX JASPAR yes 5553268
chr3 127554141 127554150 VENTX JASPAR yes 71047979
chr3 127554141 127554151 GBX1 JASPAR yes 5553269
chr3 127554141 127554151 GBX2 JASPAR yes 5553270
chr3 127554141 127554151 HOXB3 JASPAR yes 5553271
chr3 127554141 127554151 GBX1 JASPAR yes 71047980
chr3 127554141 127554151 GBX2 JASPAR yes 71047981
chr3 127554141 127554151 HOXB3 JASPAR yes 71047982
chr3 127554141 127554154 HNF1B JASPAR yes 5553272
chr3 127554141 127554154 HNF1B JASPAR yes 71047983
chr3 127554142 127554150 BARX1 JASPAR yes 5553273
chr3 127554142 127554150 EN1 JASPAR yes 5553274
chr3 127554142 127554150 ISL2 JASPAR yes 5553275
chr3 127554142 127554150 MSX1 JASPAR yes 5553276
chr3 127554142 127554150 MSX2 JASPAR yes 5553277
chr3 127554142 127554150 PDX1 JASPAR yes 5553278
chr3 127554142 127554150 BARX1 JASPAR yes 71047984
chr3 127554142 127554150 EN1 JASPAR yes 71047985
chr3 127554142 127554150 ISL2 JASPAR yes 71047986
chr3 127554142 127554150 MSX1 JASPAR yes 71047987
chr3 127554142 127554150 MSX2 JASPAR yes 71047988
chr3 127554142 127554150 PDX1 JASPAR yes 71047989
SNP sites on vista42339[chr3:127553991-127554142]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 127554032 rs182147559 C T
HNF4A HNF4G
7015865
chr3 127554037 rs143507574 C T no 7015866
chr3 127554080 rs75026131 A C
LEF1 POU2F2
7015867
chr3 127554095 rs76927961 G A
E2F1 E2F4 E2F6 E2F8 SP1
7015868
Genes possibly regulated by vista42339[chr3:127553991-127554142]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 127407909 127542051 - MGLL ENSG00000074416.9 127542051 0.85 0.99 4047 88060
chr3 127634075 127706514 + KBTBD12 ENSG00000187715.9 127634075 0.93 0.0 4048 20067
Expression level of Genes
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miRNAs possibly regulated by vista42339[chr3:127553991-127554142]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results